Variant report

Variant	rs17152724
Chromosome Location	chr11:58295347-58295348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11229357	1.00[AMR][1000 genomes]
rs12269911	1.00[AMR][1000 genomes]
rs12270849	1.00[AMR][1000 genomes]
rs12272726	1.00[AMR][1000 genomes]
rs12272891	1.00[AMR][1000 genomes]
rs12273004	1.00[AMR][1000 genomes]
rs12275822	1.00[AMR][1000 genomes]
rs12280084	1.00[AMR][1000 genomes]
rs12281618	1.00[AMR][1000 genomes]
rs12287850	1.00[AMR][1000 genomes]
rs17145606	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152630	1.00[AMR][1000 genomes]
rs17152706	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152709	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152743	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152750	1.00[ASW][hapmap];1.00[MKK][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152779	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4586183	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57786139	1.00[AMR][1000 genomes]
rs59106173	1.00[AMR][1000 genomes]
rs7102202	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104914	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112500	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7122860	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472031	1.00[AMR][1000 genomes]
rs73472034	1.00[AMR][1000 genomes]
rs73472049	1.00[AMR][1000 genomes]
rs754679	1.00[AMR][1000 genomes]
rs754680	1.00[AMR][1000 genomes]
rs7936746	1.00[AMR][1000 genomes]
rs7937507	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58290400-58295400	Weak transcription	Right Ventricle	heart
2	chr11:58291800-58297200	Weak transcription	Pancreas	Pancrea
3	chr11:58292000-58295400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:58292000-58297200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:58292000-58299200	Weak transcription	Esophagus	oesophagus
6	chr11:58292000-58299400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:58292000-58314000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:58292000-58317200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:58292000-58317600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:58292200-58297200	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:58292200-58297400	Weak transcription	Fetal Intestine Small	intestine
12	chr11:58292200-58297800	Weak transcription	Colonic Mucosa	Colon
13	chr11:58292200-58299200	Weak transcription	NHLF	lung
14	chr11:58292200-58299800	Weak transcription	NH-A	brain
15	chr11:58292200-58307200	Weak transcription	NHDF-Ad	bronchial
16	chr11:58292200-58311400	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:58292200-58312200	Weak transcription	Placenta	Placenta
18	chr11:58292200-58312400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:58292200-58314000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:58292200-58316600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:58292200-58316600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:58292200-58317200	Weak transcription	Brain Angular Gyrus	brain
23	chr11:58292200-58317200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:58292200-58317200	Weak transcription	Fetal Kidney	kidney
25	chr11:58292200-58317400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:58292200-58327400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:58292600-58313800	Weak transcription	Osteobl	bone
28	chr11:58292600-58315000	Weak transcription	Fetal Lung	lung
29	chr11:58293000-58297400	Weak transcription	Gastric	stomach
30	chr11:58293000-58301800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:58293200-58297400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:58293200-58297800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:58293400-58317000	Weak transcription	Fetal Heart	heart
34	chr11:58293400-58317200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:58293800-58297400	Strong transcription	Fetal Thymus	thymus
36	chr11:58293800-58317200	Weak transcription	Brain Germinal Matrix	brain
37	chr11:58294000-58296200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr11:58294000-58297400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:58294000-58297400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:58294200-58296000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr11:58294200-58296200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr11:58294200-58297600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:58294200-58301200	Strong transcription	Adipose Nuclei	Adipose
44	chr11:58294400-58295400	Strong transcription	Psoas Muscle	Psoas
45	chr11:58294400-58295600	Genic enhancers	Dnd41	blood
46	chr11:58294400-58295800	Strong transcription	Brain Substantia Nigra	brain
47	chr11:58294400-58295800	Strong transcription	Fetal Muscle Leg	muscle
48	chr11:58294400-58296000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:58294400-58296000	Genic enhancers	Primary T cells from cord blood	blood
50	chr11:58294400-58296000	Strong transcription	Muscle Satellite Cultured Cells	--

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