Variant report

Variant	rs1233435
Chromosome Location	chr19:44775685-44775686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44717507..44719170-chr19:44774754..44776983,2	K562	blood:

rs_ID	r²[population]
rs1233431	0.85[AMR][1000 genomes]
rs1233432	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1233436	0.80[AMR][1000 genomes]
rs1233438	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1233442	0.81[AMR][1000 genomes]
rs1233443	0.88[AMR][1000 genomes]
rs1233445	0.82[AMR][1000 genomes]
rs1233446	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1233449	0.82[AMR][1000 genomes]
rs1233450	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1233451	0.82[AMR][1000 genomes]
rs1233457	0.81[AMR][1000 genomes]
rs1233458	0.82[AMR][1000 genomes]
rs1233460	0.82[AMR][1000 genomes]
rs1233461	0.81[AMR][1000 genomes]
rs1233462	0.82[AMR][1000 genomes]
rs1233471	0.80[AMR][1000 genomes]
rs1233473	0.80[AMR][1000 genomes]
rs1233474	0.87[AMR][1000 genomes]
rs1234839	0.82[AMR][1000 genomes]
rs1234840	0.80[AMR][1000 genomes]
rs1235163	0.80[AMR][1000 genomes]
rs1237178	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1238786	0.81[AMR][1000 genomes]

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44764600-44778200	Weak transcription	HSMMtube	muscle
2	chr19:44764800-44777600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr19:44764800-44777600	Weak transcription	Placenta	Placenta
4	chr19:44764800-44782000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr19:44765000-44777400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr19:44765000-44777400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr19:44765000-44777400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr19:44765000-44777400	Weak transcription	Fetal Heart	heart
9	chr19:44765000-44777600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr19:44765000-44777600	Weak transcription	Right Ventricle	heart
11	chr19:44765000-44778000	Weak transcription	Fetal Brain Male	brain
12	chr19:44765200-44777000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr19:44765200-44777600	Weak transcription	Dnd41	blood
14	chr19:44765400-44777600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr19:44767600-44777400	Weak transcription	Brain Angular Gyrus	brain
16	chr19:44770000-44780800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr19:44770600-44777400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr19:44770600-44777600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr19:44771000-44777600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr19:44771400-44777600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr19:44771400-44777600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr19:44771400-44778200	Weak transcription	Fetal Kidney	kidney
23	chr19:44771600-44777400	Weak transcription	Primary B cells from cord blood	blood
24	chr19:44771600-44777600	Weak transcription	Thymus	Thymus
25	chr19:44772200-44777200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr19:44772200-44777200	Weak transcription	Fetal Muscle Leg	muscle
27	chr19:44772200-44777400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr19:44772200-44777400	Weak transcription	Psoas Muscle	Psoas
29	chr19:44772200-44777600	Weak transcription	Left Ventricle	heart
30	chr19:44772800-44777200	Weak transcription	Brain Hippocampus Middle	brain
31	chr19:44772800-44777400	Weak transcription	Brain Substantia Nigra	brain
32	chr19:44772800-44777400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr19:44772800-44777600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr19:44773000-44777400	Weak transcription	Brain Anterior Caudate	brain
35	chr19:44773000-44777400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr19:44773000-44778000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr19:44773200-44777400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr19:44774000-44776000	Strong transcription	Brain Germinal Matrix	brain
39	chr19:44774400-44776200	ZNF genes & repeats	Fetal Intestine Small	intestine
40	chr19:44774800-44776400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr19:44775000-44777200	Weak transcription	Gastric	stomach
42	chr19:44775000-44777400	Weak transcription	Spleen	Spleen
43	chr19:44775000-44777600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr19:44775000-44777600	Weak transcription	Fetal Stomach	stomach
45	chr19:44775000-44791200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr19:44775200-44777000	Weak transcription	Fetal Lung	lung
47	chr19:44775200-44777200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr19:44775200-44777200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr19:44775200-44777400	Weak transcription	Fetal Brain Female	brain
50	chr19:44775200-44777600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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