Variant report

Variant	rs1233432
Chromosome Location	chr19:44781211-44781212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1233430	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233431	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233433	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233434	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233435	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1233436	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233438	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233442	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233443	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233445	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233446	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233449	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233450	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233451	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233452	0.83[AMR][1000 genomes]
rs1233453	0.83[AMR][1000 genomes]
rs1233457	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233458	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233460	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233461	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233462	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233469	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233471	0.85[AMR][1000 genomes]
rs1233472	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233473	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233474	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1234839	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1234840	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1235163	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1237178	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1238786	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1347349	0.85[EUR][1000 genomes]
rs1369100	0.86[EUR][1000 genomes]
rs2164112	0.85[EUR][1000 genomes]
rs2164113	0.86[EUR][1000 genomes]
rs2168990	0.86[EUR][1000 genomes]
rs2196185	0.85[EUR][1000 genomes]
rs2249402	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2446491	0.86[EUR][1000 genomes]
rs2466421	0.83[AMR][1000 genomes]
rs2571100	0.86[EUR][1000 genomes]
rs2571105	0.85[EUR][1000 genomes]
rs2571106	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2609881	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2609883	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2609886	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2609887	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2609890	0.85[EUR][1000 genomes]
rs2609892	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2609898	0.86[EUR][1000 genomes]
rs2609905	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2609906	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2609909	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2722707	0.86[EUR][1000 genomes]
rs2722708	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2722711	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2722715	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2722716	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2722717	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2722718	0.83[AMR][1000 genomes]
rs2722719	0.83[AMR][1000 genomes]
rs2722721	0.80[AMR][1000 genomes]
rs59555311	0.86[EUR][1000 genomes]
rs6509153	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs874187	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs898175	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs898176	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs898177	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs898179	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs984116	0.85[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44764800-44782000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr19:44775000-44791200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:44776800-44784000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:44777000-44807000	ZNF genes & repeats	Liver	Liver
5	chr19:44777400-44782400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr19:44778600-44787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr19:44778800-44781600	Weak transcription	Left Ventricle	heart
8	chr19:44778800-44783200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr19:44778800-44784800	Weak transcription	Right Ventricle	heart
10	chr19:44778800-44791000	Weak transcription	Fetal Heart	heart
11	chr19:44778800-44791000	Weak transcription	HSMMtube	muscle
12	chr19:44778800-44791400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr19:44779000-44783200	Weak transcription	Fetal Lung	lung
14	chr19:44779200-44781400	Weak transcription	Placenta	Placenta
15	chr19:44779200-44783400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr19:44779200-44789200	Weak transcription	Brain Angular Gyrus	brain
17	chr19:44779400-44791000	Weak transcription	Dnd41	blood
18	chr19:44780000-44781400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr19:44780000-44781600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr19:44780000-44782200	Weak transcription	Psoas Muscle	Psoas
21	chr19:44780600-44783400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr19:44780600-44784600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr19:44780800-44781400	Weak transcription	Aorta	Aorta
24	chr19:44780800-44781600	Weak transcription	Ovary	ovary
25	chr19:44781000-44781400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr19:44781200-44782200	Enhancers	NHEK	skin

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