Variant report

Variant	rs1238786
Chromosome Location	chr19:44760258-44760259
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr19:44759694-44760589	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44749316..44752079-chr19:44759664..44762273,2	K562	blood:

Variant related genes	Relation type
ZNF233	TF binding region

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1233430	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1233431	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233432	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233433	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233434	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233435	0.81[AMR][1000 genomes]
rs1233436	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233438	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233442	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233443	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1233445	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233446	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233449	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233450	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233451	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233452	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1233453	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1233457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233458	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233460	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233461	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233462	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233469	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233471	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233472	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233473	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233474	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1234839	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1234840	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1235163	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1237178	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1347349	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1369100	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2164112	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2164113	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2168990	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2196185	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2249402	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2446491	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2571100	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2571105	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2571106	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2609881	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2609883	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2609886	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2609887	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2609890	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2609892	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2609898	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2609905	0.87[EUR][1000 genomes]
rs2609906	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2609909	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2722707	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2722708	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2722711	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2722715	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2722716	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2722717	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59555311	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6509153	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs874187	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs898175	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs898176	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs898177	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs898179	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs984116	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
3	chr19:44742000-44763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr19:44756400-44762600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:44759400-44761600	Weak transcription	Left Ventricle	heart
6	chr19:44759400-44763400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr19:44759600-44763800	Weak transcription	NH-A	brain

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