Variant report

Variant	rs1233436
Chromosome Location	chr19:44775255-44775256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44717507..44719170-chr19:44774754..44776983,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1233430	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233431	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233432	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233433	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233434	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233435	0.80[AMR][1000 genomes]
rs1233438	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233442	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233443	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233445	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233449	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233451	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233452	1.00[CEU][hapmap];0.80[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233453	1.00[CEU][hapmap];0.80[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233457	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233458	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233469	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233471	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1233472	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233473	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233474	0.88[AMR][1000 genomes]
rs1234839	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1234840	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1235163	1.00[CEU][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1237178	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1237179	0.81[CEU][hapmap]
rs1238786	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1347349	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1369100	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16978991	0.80[CEU][hapmap]
rs17657025	0.85[CEU][hapmap]
rs2117385	0.81[CEU][hapmap]
rs2117387	0.82[CEU][hapmap]
rs2164112	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2164113	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2168990	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2196185	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2249402	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2446491	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2571076	0.82[CEU][hapmap]
rs2571100	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2571105	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2571106	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2609881	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2609883	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2609886	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2609887	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2609890	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2609892	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2609898	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2609905	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2609906	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2609909	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2722707	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2722708	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2722711	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2722715	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2722716	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2722717	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59555311	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6509153	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs874187	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs898175	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs898176	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs898177	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs898179	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs984116	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
2	chr19:44764600-44778200	Weak transcription	HSMMtube	muscle
3	chr19:44764800-44777600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr19:44764800-44777600	Weak transcription	Placenta	Placenta
5	chr19:44764800-44782000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr19:44765000-44775400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr19:44765000-44777400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr19:44765000-44777400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr19:44765000-44777400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr19:44765000-44777400	Weak transcription	Fetal Heart	heart
11	chr19:44765000-44777600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr19:44765000-44777600	Weak transcription	Right Ventricle	heart
13	chr19:44765000-44778000	Weak transcription	Fetal Brain Male	brain
14	chr19:44765200-44777000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr19:44765200-44777600	Weak transcription	Dnd41	blood
16	chr19:44765400-44777600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr19:44767600-44777400	Weak transcription	Brain Angular Gyrus	brain
18	chr19:44769800-44775600	Strong transcription	Primary T cells from cord blood	blood
19	chr19:44770000-44780800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr19:44770600-44777400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr19:44770600-44777600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr19:44771000-44775600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr19:44771000-44777600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr19:44771400-44777600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr19:44771400-44777600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr19:44771400-44778200	Weak transcription	Fetal Kidney	kidney
27	chr19:44771600-44777400	Weak transcription	Primary B cells from cord blood	blood
28	chr19:44771600-44777600	Weak transcription	Thymus	Thymus
29	chr19:44772200-44777200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr19:44772200-44777200	Weak transcription	Fetal Muscle Leg	muscle
31	chr19:44772200-44777400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr19:44772200-44777400	Weak transcription	Psoas Muscle	Psoas
33	chr19:44772200-44777600	Weak transcription	Left Ventricle	heart
34	chr19:44772800-44777200	Weak transcription	Brain Hippocampus Middle	brain
35	chr19:44772800-44777400	Weak transcription	Brain Substantia Nigra	brain
36	chr19:44772800-44777400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr19:44772800-44777600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr19:44773000-44777400	Weak transcription	Brain Anterior Caudate	brain
39	chr19:44773000-44777400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr19:44773000-44778000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr19:44773200-44777400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr19:44774000-44776000	Strong transcription	Brain Germinal Matrix	brain
43	chr19:44774400-44776200	ZNF genes & repeats	Fetal Intestine Small	intestine
44	chr19:44774600-44775400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr19:44774800-44775600	ZNF genes & repeats	Colon Smooth Muscle	Colon
46	chr19:44774800-44775600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
47	chr19:44774800-44776400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr19:44775000-44777200	Weak transcription	Gastric	stomach
49	chr19:44775000-44777400	Weak transcription	Spleen	Spleen
50	chr19:44775000-44777600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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