Variant report

Variant	rs1233474
Chromosome Location	chr19:44747782-44747783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1233430	0.87[TSI][hapmap];0.80[AMR][1000 genomes]
rs1233431	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233432	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1233433	0.85[AMR][1000 genomes]
rs1233434	0.87[TSI][hapmap]
rs1233435	0.87[AMR][1000 genomes]
rs1233436	0.88[AMR][1000 genomes]
rs1233438	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1233442	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1233443	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233445	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1233446	1.00[CEU][hapmap];0.86[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1233449	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1233450	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1233451	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1233452	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233453	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233457	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1233458	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1233460	0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1233461	0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1233462	0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1233469	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233471	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233472	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233473	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233475	0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[ASN][1000 genomes]
rs1234839	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1234840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1235163	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1237178	1.00[CEU][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1237179	0.94[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap]
rs1238786	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2249402	0.87[EUR][1000 genomes]
rs2571106	0.85[EUR][1000 genomes]
rs2609881	1.00[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs2609883	0.87[EUR][1000 genomes]
rs2609886	0.87[TSI][hapmap];0.82[AMR][1000 genomes]
rs2609892	1.00[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs2609905	0.87[EUR][1000 genomes]
rs2609906	0.87[EUR][1000 genomes]
rs2609907	1.00[CEU][hapmap];0.95[TSI][hapmap]
rs2609909	0.83[AMR][1000 genomes]
rs2722708	1.00[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs2722711	0.87[EUR][1000 genomes]
rs2722715	0.87[EUR][1000 genomes]
rs2722716	0.87[EUR][1000 genomes]
rs6509153	0.87[EUR][1000 genomes]
rs874187	1.00[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs898175	1.00[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs898176	0.87[EUR][1000 genomes]
rs898177	0.87[EUR][1000 genomes]
rs898179	0.83[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
3	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:44740200-44750800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr19:44740200-44752200	Weak transcription	Hela-S3	cervix
6	chr19:44741000-44752600	Weak transcription	NHDF-Ad	bronchial
7	chr19:44741000-44753000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr19:44741200-44748000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr19:44741200-44748000	Weak transcription	Fetal Brain Male	brain
10	chr19:44741400-44751800	Weak transcription	HSMM	muscle
11	chr19:44741800-44748600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr19:44742000-44763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr19:44743400-44750800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr19:44746200-44756000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr19:44747400-44747800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr19:44747400-44747800	ZNF genes & repeats	Left Ventricle	heart
17	chr19:44747600-44747800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr19:44747600-44747800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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