Variant report

Variant	rs1233472
Chromosome Location	chr19:44749214-44749215
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1233430	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233431	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233432	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233433	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233434	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233436	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233438	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233442	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233443	0.83[AMR][1000 genomes]
rs1233445	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233446	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233449	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233450	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233451	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233452	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233453	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233457	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1233458	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233460	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233461	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233462	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233471	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233473	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233474	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233475	1.00[ASN][1000 genomes]
rs1234839	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1234840	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1235163	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1237178	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1238786	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1347349	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1369100	0.87[EUR][1000 genomes]
rs2164112	0.85[EUR][1000 genomes]
rs2164113	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2168990	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2196185	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2249402	0.81[AMR][1000 genomes]
rs2446491	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2571100	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2571105	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2571106	0.80[AMR][1000 genomes]
rs2609881	0.80[AMR][1000 genomes]
rs2609883	0.81[AMR][1000 genomes]
rs2609886	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2609887	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2609890	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2609892	0.80[AMR][1000 genomes]
rs2609898	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2609906	0.81[AMR][1000 genomes]
rs2609909	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2722707	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2722708	0.81[AMR][1000 genomes]
rs2722711	0.81[AMR][1000 genomes]
rs2722715	0.81[AMR][1000 genomes]
rs2722716	0.81[AMR][1000 genomes]
rs2722717	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59555311	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6509153	0.81[AMR][1000 genomes]
rs874187	0.81[AMR][1000 genomes]
rs898175	0.81[AMR][1000 genomes]
rs898176	0.81[AMR][1000 genomes]
rs898177	0.81[AMR][1000 genomes]
rs984116	0.85[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
3	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:44740200-44750800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr19:44740200-44752200	Weak transcription	Hela-S3	cervix
6	chr19:44741000-44752600	Weak transcription	NHDF-Ad	bronchial
7	chr19:44741000-44753000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr19:44741400-44751800	Weak transcription	HSMM	muscle
9	chr19:44742000-44763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr19:44743400-44750800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr19:44746200-44756000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr19:44748400-44750600	ZNF genes & repeats	Fetal Lung	lung
13	chr19:44748600-44749400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--

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