Variant report

Variant	rs1233469
Chromosome Location	chr19:44750571-44750572
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44749316..44752079-chr19:44759664..44762273,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1233430	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233431	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233432	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233433	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233434	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233436	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233438	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233442	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233443	0.83[AMR][1000 genomes]
rs1233445	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233446	1.00[GIH][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233449	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233450	1.00[GIH][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233451	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233452	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233453	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233457	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1233458	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233460	1.00[CEU][hapmap];1.00[GIH][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233461	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233462	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233471	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233473	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233474	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233475	0.89[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs1234839	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1234840	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1235163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1237178	1.00[GIH][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1237179	0.81[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.99[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap]
rs1238786	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1347349	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1369100	0.87[EUR][1000 genomes]
rs16978991	0.80[CEU][hapmap]
rs17657025	0.85[CEU][hapmap]
rs2117385	0.81[CEU][hapmap]
rs2117387	0.82[CEU][hapmap]
rs2164112	0.85[EUR][1000 genomes]
rs2164113	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2168990	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2196185	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2249402	0.81[AMR][1000 genomes]
rs2446491	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2571076	0.82[CEU][hapmap]
rs2571100	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2571105	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2571106	0.80[AMR][1000 genomes]
rs2609881	1.00[GIH][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes]
rs2609883	0.81[AMR][1000 genomes]
rs2609886	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2609887	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2609890	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2609892	1.00[GIH][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes]
rs2609898	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2609906	0.81[AMR][1000 genomes]
rs2609907	1.00[GIH][hapmap];0.91[TSI][hapmap]
rs2609909	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2722707	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2722708	1.00[GIH][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes]
rs2722711	0.81[AMR][1000 genomes]
rs2722715	0.81[AMR][1000 genomes]
rs2722716	0.81[AMR][1000 genomes]
rs2722717	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59555311	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6509153	0.81[AMR][1000 genomes]
rs874187	1.00[GIH][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes]
rs898175	1.00[GIH][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes]
rs898176	0.81[AMR][1000 genomes]
rs898177	0.81[AMR][1000 genomes]
rs984116	0.85[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
3	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:44740200-44750800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr19:44740200-44752200	Weak transcription	Hela-S3	cervix
6	chr19:44741000-44752600	Weak transcription	NHDF-Ad	bronchial
7	chr19:44741000-44753000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr19:44741400-44751800	Weak transcription	HSMM	muscle
9	chr19:44742000-44763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr19:44743400-44750800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr19:44746200-44756000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr19:44748400-44750600	ZNF genes & repeats	Fetal Lung	lung
13	chr19:44749600-44754600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr19:44750200-44751000	ZNF genes & repeats	A549	lung
15	chr19:44750200-44751400	Weak transcription	Left Ventricle	heart
16	chr19:44750200-44751600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr19:44750400-44750800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links