Variant report

Variant	rs1233438
Chromosome Location	chr19:44771500-44771501
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1233430	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233431	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233432	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233433	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233434	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233435	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1233436	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233442	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233443	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233445	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1233446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233449	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233451	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233452	0.84[AMR][1000 genomes]
rs1233453	0.84[AMR][1000 genomes]
rs1233457	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233458	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233460	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233461	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233469	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233471	0.87[AMR][1000 genomes]
rs1233472	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233473	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1233474	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1234839	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1234840	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1235163	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1237178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1238786	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1347349	0.85[EUR][1000 genomes]
rs1369100	0.86[EUR][1000 genomes]
rs2164112	0.85[EUR][1000 genomes]
rs2164113	0.86[EUR][1000 genomes]
rs2168990	0.86[EUR][1000 genomes]
rs2196185	0.85[EUR][1000 genomes]
rs2249402	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2446491	0.86[EUR][1000 genomes]
rs2466421	0.82[AMR][1000 genomes]
rs2571100	0.86[EUR][1000 genomes]
rs2571105	0.85[EUR][1000 genomes]
rs2571106	0.94[EUR][1000 genomes]
rs2609881	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2609883	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2609886	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2609887	0.86[EUR][1000 genomes]
rs2609890	0.85[EUR][1000 genomes]
rs2609892	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2609898	0.86[EUR][1000 genomes]
rs2609905	0.95[EUR][1000 genomes]
rs2609906	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2609907	1.00[CEU][hapmap]
rs2609909	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2722707	0.86[EUR][1000 genomes]
rs2722708	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2722711	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2722715	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2722716	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2722717	0.86[EUR][1000 genomes]
rs2722718	0.82[AMR][1000 genomes]
rs2722719	0.82[AMR][1000 genomes]
rs59555311	0.86[EUR][1000 genomes]
rs6509153	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs874187	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs898175	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs898176	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs898177	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs898179	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs984116	0.85[EUR][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
2	chr19:44764600-44778200	Weak transcription	HSMMtube	muscle
3	chr19:44764800-44777600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr19:44764800-44777600	Weak transcription	Placenta	Placenta
5	chr19:44764800-44782000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr19:44765000-44772400	Weak transcription	A549	lung
7	chr19:44765000-44772600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:44765000-44773400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr19:44765000-44774800	Weak transcription	Fetal Lung	lung
10	chr19:44765000-44774800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr19:44765000-44775400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr19:44765000-44777400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr19:44765000-44777400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr19:44765000-44777400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr19:44765000-44777400	Weak transcription	Fetal Heart	heart
16	chr19:44765000-44777600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr19:44765000-44777600	Weak transcription	Right Ventricle	heart
18	chr19:44765000-44778000	Weak transcription	Fetal Brain Male	brain
19	chr19:44765200-44777000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr19:44765200-44777600	Weak transcription	Dnd41	blood
21	chr19:44765400-44773600	Weak transcription	HepG2	liver
22	chr19:44765400-44777600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr19:44767600-44777400	Weak transcription	Brain Angular Gyrus	brain
24	chr19:44769200-44773200	Strong transcription	Brain Germinal Matrix	brain
25	chr19:44769600-44772200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr19:44769600-44772600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr19:44769800-44772200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr19:44769800-44775200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
29	chr19:44769800-44775600	Strong transcription	Primary T cells from cord blood	blood
30	chr19:44770000-44773000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr19:44770000-44773200	Strong transcription	Fetal Brain Female	brain
32	chr19:44770000-44773400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr19:44770000-44780800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr19:44770200-44771600	Strong transcription	Brain Substantia Nigra	brain
35	chr19:44770200-44771800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
36	chr19:44770200-44772200	ZNF genes & repeats	Aorta	Aorta
37	chr19:44770200-44772200	Strong transcription	Fetal Intestine Small	intestine
38	chr19:44770200-44772200	Strong transcription	Left Ventricle	heart
39	chr19:44770200-44772200	ZNF genes & repeats	Ovary	ovary
40	chr19:44770200-44772200	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr19:44770200-44772800	Strong transcription	Fetal Stomach	stomach
42	chr19:44770200-44772800	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr19:44770200-44773000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
44	chr19:44770400-44771600	Strong transcription	Primary B cells from cord blood	blood
45	chr19:44770400-44772200	ZNF genes & repeats	Spleen	Spleen
46	chr19:44770400-44772800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
47	chr19:44770400-44773000	Strong transcription	Brain Cingulate Gyrus	brain
48	chr19:44770400-44773200	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr19:44770600-44777400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr19:44770600-44777600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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