Variant report

Variant	rs2722716
Chromosome Location	chr19:44818863-44818864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44816445..44819048-chr19:45004238..45006383,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167384	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1233430	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1233431	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1233432	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1233433	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1233434	0.88[EUR][1000 genomes]
rs1233436	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1233438	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1233442	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233443	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1233445	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233446	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1233449	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233450	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1233451	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233457	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1233458	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233460	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233461	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233462	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233469	0.81[AMR][1000 genomes]
rs1233472	0.81[AMR][1000 genomes]
rs1233474	0.87[EUR][1000 genomes]
rs1234839	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1237178	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1238786	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1347349	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1369100	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1836273	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2164112	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2164113	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2168990	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2196185	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2249402	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2262860	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2446491	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2466421	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2571100	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2571105	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2571106	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2609881	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2609883	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609886	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2609887	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609889	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2609890	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609892	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2609898	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2609905	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2609906	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609909	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2722707	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2722708	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2722711	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2722715	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2722717	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2722718	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2722719	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2722721	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2722735	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2722736	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2722738	0.89[ASN][1000 genomes]
rs2722739	0.84[ASN][1000 genomes]
rs59555311	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6509153	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs874187	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898175	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898176	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898177	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898179	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs984116	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3318935	chr19:44813543-44819319	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3318936	chr19:44813543-44819319	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3330033	chr19:44813552-44819322	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44814600-44824600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr19:44818000-44819000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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