Variant report

Variant	rs1234839
Chromosome Location	chr19:44752477-44752478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44751203..44753045-chr19:44757395..44759425,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF235-1	chr19:44751193-44752527	NONHSAT066684

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1233430	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1233431	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233432	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233433	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233434	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233435	0.82[AMR][1000 genomes]
rs1233436	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233438	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233442	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233443	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1233445	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233446	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233449	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233450	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233451	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233452	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233453	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233457	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233458	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233460	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233461	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233462	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233469	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1233471	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1233472	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1233473	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1233474	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1234840	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1235163	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1237178	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1238786	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347349	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1369100	0.94[EUR][1000 genomes]
rs2164112	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2164113	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2168990	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2196185	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2249402	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2446491	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2571100	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2571105	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2571106	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2609881	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2609883	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2609886	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2609887	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2609890	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2609892	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2609898	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2609905	0.84[EUR][1000 genomes]
rs2609906	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2609909	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2722707	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2722708	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2722711	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2722715	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2722716	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2722717	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59555311	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6509153	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs874187	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs898175	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs898176	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs898177	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs898179	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs984116	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
3	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:44741000-44752600	Weak transcription	NHDF-Ad	bronchial
5	chr19:44741000-44753000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr19:44742000-44763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr19:44746200-44756000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr19:44749600-44754600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:44750800-44754400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr19:44751400-44753200	ZNF genes & repeats	Ovary	ovary
11	chr19:44751400-44756200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr19:44751600-44752800	Weak transcription	Left Ventricle	heart
13	chr19:44751600-44754200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
14	chr19:44751800-44752600	ZNF genes & repeats	HSMM	muscle
15	chr19:44751800-44752800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr19:44751800-44753000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr19:44751800-44753200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr19:44752200-44753000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
19	chr19:44752200-44753200	ZNF genes & repeats	Aorta	Aorta
20	chr19:44752200-44754000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
21	chr19:44752200-44754000	ZNF genes & repeats	Colon Smooth Muscle	Colon
22	chr19:44752400-44753200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
23	chr19:44752400-44753800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr19:44752400-44754200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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