Variant report

Variant	rs2609909
Chromosome Location	chr19:44794704-44794705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1233430	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233431	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233432	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233433	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233434	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233436	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233438	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233442	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233443	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233445	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233446	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233449	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233450	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233451	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233452	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233453	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233457	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1233458	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233460	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233461	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233462	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233469	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233471	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1233472	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233473	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1233474	0.83[AMR][1000 genomes]
rs1234839	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1234840	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1235163	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1237178	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1238786	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1347349	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1369100	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2164112	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2164113	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2168990	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2196185	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2249402	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2446491	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2571100	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2571105	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2571106	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2609881	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2609883	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2609886	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609887	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2609890	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2609892	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2609898	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2609905	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2609906	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2722707	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2722708	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2722711	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2722715	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2722716	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2722717	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59555311	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6509153	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs874187	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs898175	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs898176	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs898177	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs898179	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs984116	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44777000-44807000	ZNF genes & repeats	Liver	Liver
2	chr19:44781800-44801400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:44783200-44804400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:44785200-44801600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:44788000-44799800	Weak transcription	HepG2	liver
6	chr19:44788200-44801600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
7	chr19:44788800-44795400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
8	chr19:44790000-44795200	ZNF genes & repeats	Fetal Muscle Leg	muscle
9	chr19:44790000-44801600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
10	chr19:44790400-44794800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr19:44790400-44806800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr19:44790400-44808400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr19:44790600-44795400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
14	chr19:44790600-44801200	Weak transcription	NHLF	lung
15	chr19:44790800-44795000	ZNF genes & repeats	Colon Smooth Muscle	Colon
16	chr19:44790800-44797400	ZNF genes & repeats	Fetal Lung	lung
17	chr19:44790800-44798400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr19:44791000-44794800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr19:44791000-44795000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
20	chr19:44791000-44795000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
21	chr19:44791000-44795000	ZNF genes & repeats	Left Ventricle	heart
22	chr19:44791000-44795400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
23	chr19:44791000-44795400	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr19:44791000-44795400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr19:44791000-44799600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
26	chr19:44791000-44800200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
27	chr19:44791200-44794800	Strong transcription	Placenta	Placenta
28	chr19:44791200-44794800	Strong transcription	Right Ventricle	heart
29	chr19:44791200-44795000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
30	chr19:44791200-44795000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr19:44791200-44795000	ZNF genes & repeats	Aorta	Aorta
32	chr19:44791200-44795000	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr19:44791200-44795200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
34	chr19:44791200-44795400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
35	chr19:44791200-44795400	ZNF genes & repeats	Colonic Mucosa	Colon
36	chr19:44791200-44795400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
37	chr19:44791200-44798800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
38	chr19:44791200-44801600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
39	chr19:44791200-44801600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
40	chr19:44791200-44802200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
41	chr19:44791200-44806800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
42	chr19:44791400-44794800	Strong transcription	NHEK	skin
43	chr19:44791400-44795000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr19:44791400-44795000	ZNF genes & repeats	Esophagus	oesophagus
45	chr19:44791400-44795000	ZNF genes & repeats	Lung	lung
46	chr19:44791400-44795000	ZNF genes & repeats	Thymus	Thymus
47	chr19:44791400-44795000	ZNF genes & repeats	Spleen	Spleen
48	chr19:44791400-44795200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr19:44791400-44795200	ZNF genes & repeats	Ovary	ovary
50	chr19:44791400-44795200	ZNF genes & repeats	Small Intestine	intestine

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