Variant report

Variant	rs2609898
Chromosome Location	chr19:44826342-44826343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1233430	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1233431	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1233432	0.86[EUR][1000 genomes]
rs1233433	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1233434	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1233436	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1233438	0.86[EUR][1000 genomes]
rs1233442	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1233443	0.81[EUR][1000 genomes]
rs1233445	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1233446	0.86[EUR][1000 genomes]
rs1233449	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1233450	0.86[EUR][1000 genomes]
rs1233451	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1233452	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1233453	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1233457	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1233458	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1233460	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1233461	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1233462	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1233469	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233471	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1233472	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233473	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1234839	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1234840	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1235163	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1237178	0.86[EUR][1000 genomes]
rs1238786	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1347349	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1369100	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1836273	0.81[ASN][1000 genomes]
rs2164112	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2164113	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2168990	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196185	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2249402	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2262860	0.90[ASN][1000 genomes]
rs2446491	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2466421	0.99[ASN][1000 genomes]
rs2571100	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2571105	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2571106	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609881	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609883	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2609886	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2609887	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2609889	0.99[ASN][1000 genomes]
rs2609890	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2609892	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609905	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2609906	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2609909	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2722707	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2722708	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2722711	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2722715	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2722716	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2722717	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2722718	0.99[ASN][1000 genomes]
rs2722719	0.99[ASN][1000 genomes]
rs2722721	1.00[ASN][1000 genomes]
rs2722735	0.90[ASN][1000 genomes]
rs2722736	0.90[ASN][1000 genomes]
rs2722738	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2722739	0.83[ASN][1000 genomes]
rs59555311	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6509153	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs874187	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs898175	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs898176	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs898177	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs898179	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs984116	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44823200-44856200	ZNF genes & repeats	Liver	Liver
2	chr19:44824800-44829400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:44824800-44841000	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:44825000-44846600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:44825200-44828800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr19:44825800-44831800	Weak transcription	Right Ventricle	heart

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