Variant report

Variant	rs12339221
Chromosome Location	chr9:97423389-97423390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97418815..97421643-chr9:97422033..97423738,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10081702	0.86[EUR][1000 genomes]
rs10117956	0.86[EUR][1000 genomes]
rs10124091	0.86[EUR][1000 genomes]
rs10124217	0.86[EUR][1000 genomes]
rs12336203	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12337796	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12339942	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344517	0.86[EUR][1000 genomes]
rs12346245	0.86[EUR][1000 genomes]
rs12347853	0.83[EUR][1000 genomes]
rs12350284	0.86[EUR][1000 genomes]
rs12685159	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13287373	0.86[EUR][1000 genomes]
rs13295608	0.86[EUR][1000 genomes]
rs13298361	0.86[EUR][1000 genomes]
rs16911536	0.86[EUR][1000 genomes]
rs16911594	0.86[EUR][1000 genomes]
rs34000226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34089610	0.88[EUR][1000 genomes]
rs34165368	0.88[EUR][1000 genomes]
rs34540802	0.88[EUR][1000 genomes]
rs35060589	0.88[EUR][1000 genomes]
rs35414853	0.86[EUR][1000 genomes]
rs35557606	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36025648	0.88[EUR][1000 genomes]
rs36039841	0.88[EUR][1000 genomes]
rs41281164	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56338410	0.88[EUR][1000 genomes]
rs61247576	0.88[EUR][1000 genomes]
rs6479563	0.86[EUR][1000 genomes]
rs67161795	0.86[EUR][1000 genomes]
rs67845333	0.88[EUR][1000 genomes]
rs7024174	0.90[ASN][1000 genomes]
rs7028725	0.90[ASN][1000 genomes]
rs7871632	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97419800-97427200	Weak transcription	HSMM	muscle
2	chr9:97420000-97427800	Weak transcription	HSMMtube	muscle

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