Variant report

Variant	rs10081702
Chromosome Location	chr9:97430831-97430832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97430826..97431807-chr9:97889562..97890595,6	MCF-7	breast:
2	chr9:97430208..97431715-chr9:97447673..97449794,2	K562	blood:
3	chr9:97429455..97432158-chr9:97487804..97490405,2	MCF-7	breast:
4	chr9:97428600..97431226-chr9:97889524..97892022,2	MCF-7	breast:
5	chr9:97314858..97318138-chr9:97429775..97431478,3	MCF-7	breast:
6	chr9:97430687..97431497-chr9:97893326..97894285,4	MCF-7	breast:
7	chr9:97400839..97403721-chr9:97429734..97432709,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231806	Chromatin interaction
ENSG00000158169	Chromatin interaction
ENSG00000165140	Chromatin interaction
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10117499	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10117956	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10118261	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10119354	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10124091	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10124217	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993307	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10993320	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12115845	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12336203	0.88[EUR][1000 genomes]
rs12339221	0.86[EUR][1000 genomes]
rs12339300	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12339942	0.83[EUR][1000 genomes]
rs12344517	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12344604	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12346245	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12347853	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12350284	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12685159	0.82[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs13287373	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13295608	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13298361	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1571144	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16911536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16911594	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34000226	0.86[EUR][1000 genomes]
rs34089610	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34165368	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34198898	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34540802	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34705993	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35060589	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35121098	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35414853	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35557606	0.86[EUR][1000 genomes]
rs35823631	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35840707	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35984007	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36025648	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36039841	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41281164	0.85[EUR][1000 genomes]
rs55718833	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56268713	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56338410	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60605105	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61247576	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61388738	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6479563	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67161795	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67845333	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7032765	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72747008	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7850175	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7859242	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7871632	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7874823	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9696054	0.84[EUR][1000 genomes]
rs9696547	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97424600-97431400	Enhancers	Fetal Intestine Large	intestine
2	chr9:97424600-97431400	Enhancers	Fetal Intestine Small	intestine
3	chr9:97427400-97431200	Enhancers	Duodenum Mucosa	Duodenum
4	chr9:97428000-97431400	Weak transcription	HSMM	muscle
5	chr9:97428600-97431000	Enhancers	Liver	Liver
6	chr9:97428800-97431200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:97429400-97431400	Weak transcription	Pancreas	Pancrea
8	chr9:97429400-97436000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:97429800-97431200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr9:97429800-97431200	Enhancers	Hela-S3	cervix
11	chr9:97430200-97431200	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr9:97430600-97431200	Enhancers	Primary hematopoietic stem cells	blood
13	chr9:97430600-97431200	Enhancers	HepG2	liver
14	chr9:97430600-97431400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:97430800-97431000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:97430800-97431000	Enhancers	HSMMtube	muscle
17	chr9:97430800-97431200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr9:97430800-97431200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:97430800-97431200	Enhancers	Fetal Thymus	thymus
20	chr9:97430800-97431200	Enhancers	A549	lung
21	chr9:97430800-97431200	Enhancers	Dnd41	blood
22	chr9:97430800-97431200	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr9:97430800-97431200	Enhancers	NHEK	skin
24	chr9:97430800-97431600	Enhancers	Fetal Kidney	kidney
25	chr9:97430800-97431800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:97430800-97431800	Enhancers	Placenta Amnion	Placenta Amnion
27	chr9:97430800-97432000	Active TSS	Primary T killer memory cells from peripheral blood	blood

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