Variant report

Variant	rs34198898
Chromosome Location	chr9:97466825-97466826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97461434..97463640-chr9:97466023..97468786,2	K562	blood:
2	chr9:97459537..97462925-chr9:97464708..97468853,4	MCF-7	breast:
3	chr9:97461323..97463408-chr9:97466461..97468614,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10081702	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10117499	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117956	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10118261	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10119354	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124091	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10124217	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10993307	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993320	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12115845	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12339300	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344517	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12344604	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346245	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12347853	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12350284	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13287373	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13295608	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13298361	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1571144	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16911536	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911594	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34089610	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34165368	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34274440	0.93[EUR][1000 genomes]
rs34540802	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34705993	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35060589	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35121098	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35414853	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35823631	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35840707	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35984007	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36025648	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36039841	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55718833	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56268713	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56338410	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56908448	0.91[AFR][1000 genomes]
rs60605105	0.81[ASN][1000 genomes]
rs61247576	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479563	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67161795	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67845333	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7032765	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7044668	0.82[AFR][1000 genomes]
rs72747008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850175	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859242	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871632	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7874823	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9696054	0.98[EUR][1000 genomes]
rs9696547	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97463600-97467200	Weak transcription	Placenta	Placenta
2	chr9:97465800-97469600	Enhancers	Fetal Lung	lung
3	chr9:97465800-97469600	Enhancers	Fetal Stomach	stomach
4	chr9:97466000-97467400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:97466000-97468400	Weak transcription	Small Intestine	intestine
6	chr9:97466400-97467200	Weak transcription	Brain Germinal Matrix	brain
7	chr9:97466600-97467400	Weak transcription	Fetal Intestine Small	intestine
8	chr9:97466600-97469200	Weak transcription	Liver	Liver
9	chr9:97466600-97469200	Weak transcription	Fetal Intestine Large	intestine
10	chr9:97466600-97469800	Enhancers	HepG2	liver

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