Variant report

Variant	rs10993320
Chromosome Location	chr9:97471892-97471893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97468561..97472300-chr9:97479703..97482025,3	MCF-7	breast:
2	chr9:97470578..97472511-chr9:97491316..97494185,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10081702	0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10117499	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10117956	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10118261	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10119354	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10124091	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10124217	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993307	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12115845	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12339300	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12344517	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12344604	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12346245	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12347853	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12350284	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13287373	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13295608	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13298361	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1571144	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16911536	0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16911594	0.84[EUR][1000 genomes]
rs34089610	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34165368	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34198898	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34274440	0.87[EUR][1000 genomes]
rs34540802	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34705993	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35060589	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35121098	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35414853	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35823631	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35840707	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35984007	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36025648	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36039841	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55718833	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56268713	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56338410	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61247576	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6479563	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67161795	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67845333	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7032765	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72747008	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7850175	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7859242	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7871632	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7874823	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9696054	0.93[EUR][1000 genomes]
rs9696547	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97471800-97472000	Enhancers	K562	blood

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