Variant report

Variant	rs1571144
Chromosome Location	chr9:97453275-97453276
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10081702	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10117499	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10117956	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10118261	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10119354	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10124091	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10124217	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10993307	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993320	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12115845	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12339300	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12344517	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12344604	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12346245	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12347853	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12350284	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13287373	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13295608	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13298361	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16911536	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16911594	0.85[EUR][1000 genomes]
rs34089610	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34165368	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34198898	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34274440	0.93[EUR][1000 genomes]
rs34540802	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34705993	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35060589	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35121098	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35414853	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35823631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35840707	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35984007	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36025648	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36039841	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55718833	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56268713	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56338410	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61247576	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6479563	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67161795	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67845333	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7032765	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72747008	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7850175	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7859242	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7871632	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7874823	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9696054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9696547	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97449200-97456200	Weak transcription	Fetal Intestine Large	intestine
2	chr9:97449800-97454200	Weak transcription	A549	lung
3	chr9:97451600-97454400	Weak transcription	HepG2	liver
4	chr9:97453200-97454400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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