Variant report

Variant	rs13287373
Chromosome Location	chr9:97434412-97434413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97432815..97434625-chr9:97564258..97567055,2	MCF-7	breast:
2	chr9:97433316..97436555-chr9:97441154..97443676,3	MCF-7	breast:
3	chr9:97431591..97434425-chr9:97442204..97443776,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10081702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10117499	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10117956	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10118261	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10119354	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10124091	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10124217	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993307	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10993320	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12115845	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12336203	0.88[EUR][1000 genomes]
rs12339221	0.86[EUR][1000 genomes]
rs12339300	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12339942	0.83[EUR][1000 genomes]
rs12344517	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12344604	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12346245	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12347853	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12350284	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685159	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs13295608	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13298361	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1571144	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16911536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16911594	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34000226	0.86[EUR][1000 genomes]
rs34089610	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34165368	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34198898	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34540802	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34705993	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35060589	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35121098	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35414853	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35557606	0.86[EUR][1000 genomes]
rs35823631	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35840707	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35984007	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36025648	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36039841	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41281164	0.85[EUR][1000 genomes]
rs55718833	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56268713	0.84[EUR][1000 genomes]
rs56338410	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60605105	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61247576	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61388738	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6479563	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67161795	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67845333	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7032765	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72747008	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7850175	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7859242	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7871632	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7874823	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9696054	0.84[EUR][1000 genomes]
rs9696547	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97429400-97436000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:97431600-97434800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:97431600-97436800	Weak transcription	HSMMtube	muscle
4	chr9:97431600-97437200	Weak transcription	Fetal Kidney	kidney
5	chr9:97431800-97434800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:97431800-97435000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:97431800-97435000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:97431800-97435000	Weak transcription	NH-A	brain
9	chr9:97431800-97435000	Weak transcription	NHLF	lung
10	chr9:97431800-97435200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:97431800-97435200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:97431800-97435200	Weak transcription	HSMM	muscle
13	chr9:97431800-97435200	Weak transcription	HUVEC	blood vessel
14	chr9:97431800-97435600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:97431800-97435600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:97431800-97437000	Weak transcription	Adipose Nuclei	Adipose
17	chr9:97431800-97441000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:97432000-97435000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:97432000-97435000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:97432000-97435000	Weak transcription	HMEC	breast
21	chr9:97432000-97435000	Weak transcription	NHEK	skin
22	chr9:97432000-97435000	Weak transcription	Osteobl	bone
23	chr9:97432000-97438600	Weak transcription	Ovary	ovary
24	chr9:97432200-97437800	Weak transcription	Fetal Intestine Small	intestine
25	chr9:97432200-97449800	Weak transcription	Right Atrium	heart
26	chr9:97432400-97437000	Weak transcription	HepG2	liver
27	chr9:97432600-97435000	Weak transcription	A549	lung
28	chr9:97432800-97435000	Weak transcription	Hela-S3	cervix
29	chr9:97434400-97439000	Enhancers	NHDF-Ad	bronchial

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