Variant report

Variant	rs34089610
Chromosome Location	chr9:97443765-97443766
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97441827..97444404-chr9:97892662..97894704,2	MCF-7	breast:
2	chr9:97442634..97444916-chr9:97682011..97684756,3	MCF-7	breast:
3	chr9:97443408..97444334-chr9:97889590..97890646,8	MCF-7	breast:
4	chr9:97443407..97445106-chr9:97754287..97756345,2	MCF-7	breast:
5	chr9:97441676..97443981-chr9:97576618..97578169,2	MCF-7	breast:
6	chr9:97443321..97444335-chr9:97877995..97879538,5	MCF-7	breast:
7	chr9:97443304..97445720-chr9:97866008..97868131,2	MCF-7	breast:
8	chr9:97443329..97444394-chr9:97893249..97894271,3	MCF-7	breast:
9	chr9:97441040..97444032-chr9:97871150..97872660,2	MCF-7	breast:
10	chr9:97431591..97434425-chr9:97442204..97443776,2	MCF-7	breast:
11	chr9:97443575..97445900-chr9:97751534..97753701,2	MCF-7	breast:
12	chr9:97443387..97444120-chr9:97886736..97887568,2	MCF-7	breast:
13	chr9:97443377..97444218-chr9:97888970..97890354,6	MCF-7	breast:
14	chr9:97441331..97443986-chr9:97767707..97769717,2	MCF-7	breast:
15	chr9:97443218..97444014-chr9:97891756..97892684,2	MCF-7	breast:
16	chr9:97443476..97444352-chr9:97544818..97545780,2	MCF-7	breast:
17	chr9:97443457..97444352-chr9:97889625..97890490,6	K562	blood:
18	chr9:97443655..97445355-chr9:97879259..97881935,2	MCF-7	breast:
19	chr9:97443362..97445531-chr9:97792308..97793975,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000158169	Chromatin interaction
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10081702	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10117499	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10117956	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10118261	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10119354	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10124091	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10124217	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10993307	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10993320	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12115845	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12336203	0.89[EUR][1000 genomes]
rs12337796	0.80[EUR][1000 genomes]
rs12339221	0.88[EUR][1000 genomes]
rs12339300	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12339942	0.85[EUR][1000 genomes]
rs12344517	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12344604	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12346245	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12347853	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12350284	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12685159	0.88[EUR][1000 genomes]
rs13287373	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13295608	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13298361	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1571144	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16911536	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16911594	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34000226	0.88[EUR][1000 genomes]
rs34165368	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34198898	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34274440	0.80[EUR][1000 genomes]
rs34540802	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34705993	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35060589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35121098	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35414853	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35557606	0.88[EUR][1000 genomes]
rs35823631	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35840707	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35984007	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36025648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36039841	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41281164	0.86[EUR][1000 genomes]
rs55718833	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56268713	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56338410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60605105	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61247576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61388738	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6479563	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67161795	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67845333	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7032765	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72747008	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7850175	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7859242	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7871632	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7874823	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9696054	0.85[EUR][1000 genomes]
rs9696547	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97432200-97449800	Weak transcription	Right Atrium	heart
2	chr9:97438000-97444000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:97438800-97444000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:97438800-97449800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:97439000-97443800	Weak transcription	NHDF-Ad	bronchial
6	chr9:97439000-97444000	Weak transcription	Osteobl	bone
7	chr9:97441000-97443800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:97441800-97444000	Enhancers	A549	lung
9	chr9:97442400-97444200	Enhancers	Aorta	Aorta
10	chr9:97442400-97444600	Enhancers	Fetal Stomach	stomach
11	chr9:97443000-97444000	Enhancers	HSMMtube	muscle
12	chr9:97443400-97443800	Enhancers	HepG2	liver
13	chr9:97443400-97444000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:97443400-97444000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:97443600-97443800	Enhancers	Ovary	ovary
16	chr9:97443600-97444200	Enhancers	Fetal Muscle Leg	muscle
17	chr9:97443600-97444400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr9:97443600-97444600	Enhancers	Brain Cingulate Gyrus	brain
19	chr9:97443600-97444600	Enhancers	Brain Hippocampus Middle	brain
20	chr9:97443600-97444600	Enhancers	HSMM	muscle

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