Variant report

Variant	rs61388738
Chromosome Location	chr9:97431909-97431910
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97429455..97432158-chr9:97487804..97490405,2	MCF-7	breast:
2	chr9:97316595..97318238-chr9:97430953..97432955,2	MCF-7	breast:
3	chr9:97426120..97427980-chr9:97431313..97433005,2	MCF-7	breast:
4	chr9:97400839..97403721-chr9:97429734..97432709,4	MCF-7	breast:
5	chr9:97413279..97414957-chr9:97431103..97432914,2	MCF-7	breast:
6	chr9:97431591..97434425-chr9:97442204..97443776,2	MCF-7	breast:
7	chr9:97392176..97395070-chr9:97431603..97433493,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165140	Chromatin interaction
ENSG00000231806	Chromatin interaction
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10081702	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10117956	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10124091	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10124217	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12115845	0.83[ASN][1000 genomes]
rs12336203	0.82[EUR][1000 genomes]
rs12344517	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12346245	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12347853	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12350284	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13287373	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13295608	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13298361	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16911536	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16911594	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34089610	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34165368	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34540802	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35060589	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35414853	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35823631	0.83[ASN][1000 genomes]
rs36025648	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36039841	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56338410	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60605105	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61247576	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6479563	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67161795	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67845333	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7032765	0.83[ASN][1000 genomes]
rs7871632	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97429400-97436000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:97430800-97432000	Active TSS	Primary T killer memory cells from peripheral blood	blood
3	chr9:97431000-97432000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr9:97431000-97432000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:97431200-97432000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
6	chr9:97431200-97432000	Active TSS	Primary T cells from cord blood	blood
7	chr9:97431200-97432000	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr9:97431200-97432000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
9	chr9:97431200-97432000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
10	chr9:97431200-97432000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:97431200-97432000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
12	chr9:97431200-97432000	Flanking Active TSS	Fetal Thymus	thymus
13	chr9:97431200-97432000	Active TSS	Right Atrium	heart
14	chr9:97431200-97432000	Active TSS	Thymus	Thymus
15	chr9:97431200-97432000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr9:97431200-97432200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:97431200-97432200	Active TSS	Primary T cells fromperipheralblood	blood
18	chr9:97431200-97432200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr9:97431200-97432200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:97431200-97432200	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr9:97431200-97432600	Active TSS	A549	lung
22	chr9:97431400-97432000	Flanking Active TSS	Primary B cells from peripheral blood	blood
23	chr9:97431400-97432000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr9:97431400-97432000	Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr9:97431400-97432000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:97431400-97432000	Active TSS	Aorta	Aorta
27	chr9:97431400-97432000	Active TSS	Ovary	ovary
28	chr9:97431400-97432200	Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr9:97431400-97432200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr9:97431600-97432200	Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr9:97431600-97432400	Active TSS	Placenta	Placenta
32	chr9:97431600-97434800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr9:97431600-97436800	Weak transcription	HSMMtube	muscle
34	chr9:97431600-97437200	Weak transcription	Fetal Kidney	kidney
35	chr9:97431800-97432000	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr9:97431800-97432000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:97431800-97432000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr9:97431800-97432000	Enhancers	HMEC	breast
39	chr9:97431800-97432000	Active TSS	NHEK	skin
40	chr9:97431800-97432000	Enhancers	Osteobl	bone
41	chr9:97431800-97432200	Active TSS	Primary neutrophils fromperipheralblood	blood
42	chr9:97431800-97432200	Active TSS	Liver	Liver
43	chr9:97431800-97432200	Active TSS	Colonic Mucosa	Colon
44	chr9:97431800-97432200	Active TSS	Duodenum Mucosa	Duodenum
45	chr9:97431800-97432200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr9:97431800-97432200	Enhancers	Fetal Intestine Small	intestine
47	chr9:97431800-97432200	Active TSS	Rectal Mucosa Donor 29	rectum
48	chr9:97431800-97432200	Active TSS	Rectal Mucosa Donor 31	rectum
49	chr9:97431800-97432200	Active TSS	Dnd41	blood
50	chr9:97431800-97432200	Active TSS	HepG2	liver

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