Variant report

Variant	rs36039841
Chromosome Location	chr9:97431600-97431601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97430826..97431807-chr9:97889562..97890595,6	MCF-7	breast:
2	chr19:3562354..3563014-chr9:97431251..97431861,2	Hela-S3	cervix:
3	chr9:97430208..97431715-chr9:97447673..97449794,2	K562	blood:
4	chr9:97429455..97432158-chr9:97487804..97490405,2	MCF-7	breast:
5	chr9:97316595..97318238-chr9:97430953..97432955,2	MCF-7	breast:
6	chr9:97430886..97431741-chr9:97889631..97890543,3	MCF-7	breast:
7	chr9:97426120..97427980-chr9:97431313..97433005,2	MCF-7	breast:
8	chr9:97400839..97403721-chr9:97429734..97432709,4	MCF-7	breast:
9	chr9:97413279..97414957-chr9:97431103..97432914,2	MCF-7	breast:
10	chr9:97431172..97431716-chr9:97541009..97541526,2	MCF-7	breast:
11	chr9:97431591..97434425-chr9:97442204..97443776,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000158169	Chromatin interaction
ENSG00000165140	Chromatin interaction
ENSG00000148120	Chromatin interaction
ENSG00000231806	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10081702	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117499	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10117956	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10118261	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10119354	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10124091	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10124217	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993307	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10993320	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12115845	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12336203	0.89[EUR][1000 genomes]
rs12337796	0.80[EUR][1000 genomes]
rs12339221	0.88[EUR][1000 genomes]
rs12339300	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12339942	0.85[EUR][1000 genomes]
rs12344517	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12344604	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12346245	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12347853	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12350284	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12685159	0.88[EUR][1000 genomes]
rs13287373	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13295608	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13298361	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1571144	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16911536	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16911594	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34000226	0.88[EUR][1000 genomes]
rs34089610	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34165368	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34198898	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34274440	0.80[EUR][1000 genomes]
rs34540802	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34705993	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35060589	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35121098	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35414853	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35557606	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35823631	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35840707	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35984007	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36025648	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41281164	0.86[EUR][1000 genomes]
rs55718833	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56268713	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56338410	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60605105	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61247576	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61388738	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6479563	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67161795	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67845333	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7032765	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72747008	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7850175	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7859242	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7871632	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7874823	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9696054	0.85[EUR][1000 genomes]
rs9696547	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97429400-97436000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:97430800-97431600	Enhancers	Fetal Kidney	kidney
3	chr9:97430800-97431800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:97430800-97431800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr9:97430800-97432000	Active TSS	Primary T killer memory cells from peripheral blood	blood
6	chr9:97431000-97431600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr9:97431000-97431600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:97431000-97431800	Active TSS	Primary B cells from cord blood	blood
9	chr9:97431000-97431800	Flanking Active TSS	Liver	Liver
10	chr9:97431000-97431800	Enhancers	NH-A	brain
11	chr9:97431000-97432000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr9:97431000-97432000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:97431200-97431600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr9:97431200-97431600	Flanking Active TSS	Brain Anterior Caudate	brain
15	chr9:97431200-97431600	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr9:97431200-97431800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr9:97431200-97431800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:97431200-97431800	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr9:97431200-97431800	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr9:97431200-97431800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
21	chr9:97431200-97431800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
22	chr9:97431200-97431800	Active TSS	Stomach Smooth Muscle	stomach
23	chr9:97431200-97431800	Flanking Active TSS	Dnd41	blood
24	chr9:97431200-97431800	Active TSS	GM12878-XiMat	blood
25	chr9:97431200-97431800	Flanking Active TSS	Hela-S3	cervix
26	chr9:97431200-97431800	Flanking Active TSS	NHEK	skin
27	chr9:97431200-97431800	Active TSS	NHLF	lung
28	chr9:97431200-97432000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
29	chr9:97431200-97432000	Active TSS	Primary T cells from cord blood	blood
30	chr9:97431200-97432000	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr9:97431200-97432000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr9:97431200-97432000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr9:97431200-97432000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr9:97431200-97432000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
35	chr9:97431200-97432000	Flanking Active TSS	Fetal Thymus	thymus
36	chr9:97431200-97432000	Active TSS	Right Atrium	heart
37	chr9:97431200-97432000	Active TSS	Thymus	Thymus
38	chr9:97431200-97432000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr9:97431200-97432200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr9:97431200-97432200	Active TSS	Primary T cells fromperipheralblood	blood
41	chr9:97431200-97432200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
42	chr9:97431200-97432200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr9:97431200-97432200	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr9:97431200-97432600	Active TSS	A549	lung
45	chr9:97431400-97431600	Enhancers	Colon Smooth Muscle	Colon
46	chr9:97431400-97431600	Active TSS	Fetal Heart	heart
47	chr9:97431400-97431600	Flanking Active TSS	Fetal Intestine Large	intestine
48	chr9:97431400-97431600	Enhancers	Fetal Muscle Leg	muscle
49	chr9:97431400-97431600	Flanking Active TSS	Placenta	Placenta
50	chr9:97431400-97431600	Flanking Active TSS	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links