Variant report

Variant	rs34540802
Chromosome Location	chr9:97427583-97427584
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97415275..97418295-chr9:97425783..97428113,3	MCF-7	breast:
2	chr9:97423609..97426404-chr9:97427212..97430149,2	MCF-7	breast:
3	chr9:97426120..97427980-chr9:97431313..97433005,2	MCF-7	breast:
4	chr9:97425661..97428658-chr9:97766132..97767646,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10081702	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10117499	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10117956	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10118261	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10119354	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10124091	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10124217	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993307	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10993320	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12115845	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12336203	0.89[EUR][1000 genomes]
rs12337796	0.80[EUR][1000 genomes]
rs12339221	0.88[EUR][1000 genomes]
rs12339300	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12339942	0.85[EUR][1000 genomes]
rs12344517	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12344604	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12346245	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12347853	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12350284	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12685159	0.88[EUR][1000 genomes]
rs13287373	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13295608	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13298361	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1571144	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16911536	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16911594	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34000226	0.88[EUR][1000 genomes]
rs34089610	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34165368	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34198898	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34274440	0.80[EUR][1000 genomes]
rs34705993	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35060589	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35121098	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35414853	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35557606	0.88[EUR][1000 genomes]
rs35823631	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35840707	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35984007	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36025648	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36039841	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41281164	0.86[EUR][1000 genomes]
rs55718833	0.85[EUR][1000 genomes]
rs56268713	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56338410	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60605105	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61247576	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61388738	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6479563	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67161795	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67845333	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7032765	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72747008	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7850175	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7859242	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7871632	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7874823	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9696054	0.85[EUR][1000 genomes]
rs9696547	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97420000-97427800	Weak transcription	HSMMtube	muscle
2	chr9:97424600-97431400	Enhancers	Fetal Intestine Large	intestine
3	chr9:97424600-97431400	Enhancers	Fetal Intestine Small	intestine
4	chr9:97425600-97428000	Enhancers	Liver	Liver
5	chr9:97426600-97427600	Weak transcription	HepG2	liver
6	chr9:97426800-97428000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr9:97426800-97428200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:97427200-97428000	Enhancers	HSMM	muscle
9	chr9:97427400-97428800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:97427400-97431200	Enhancers	Duodenum Mucosa	Duodenum

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