Variant report

Variant	rs10117499
Chromosome Location	chr9:97464447-97464448
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10081702	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10117956	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10118261	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10119354	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124091	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10124217	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10993307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993320	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12115845	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12339300	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344517	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12344604	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346245	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12347853	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12350284	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12685159	0.85[GIH][hapmap]
rs13287373	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13295608	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13298361	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1571144	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16911536	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16911594	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34089610	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34165368	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34198898	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34274440	0.91[EUR][1000 genomes]
rs34540802	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34705993	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35060589	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35121098	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35414853	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35823631	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35840707	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35984007	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36025648	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36039841	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55718833	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56268713	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56338410	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60605105	0.81[ASN][1000 genomes]
rs61247576	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479563	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67161795	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67845333	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7032765	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72747008	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850175	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859242	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871632	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7874823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9696054	0.96[EUR][1000 genomes]
rs9696547	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3502975	chr9:97461331-97466629	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3502973	chr9:97461395-97465947	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3405746	chr9:97461831-97466479	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3483152	chr9:97462401-97465687	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3483153	chr9:97462402-97465659	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3349687	chr9:97462414-97465642	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3502978	chr9:97462432-97465622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3502976	chr9:97462449-97465560	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3502977	chr9:97462482-97465561	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3502972	chr9:97462525-97465513	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3483154	chr9:97462532-97465506	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3502979	chr9:97462532-97465506	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv10242	chr9:97462576-97464526	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97457400-97465800	Weak transcription	Fetal Stomach	stomach
2	chr9:97460800-97465400	Weak transcription	Fetal Intestine Small	intestine
3	chr9:97461000-97465400	Weak transcription	Fetal Intestine Large	intestine
4	chr9:97461000-97465800	Weak transcription	Fetal Lung	lung
5	chr9:97461200-97465400	Weak transcription	HepG2	liver
6	chr9:97461200-97465800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:97463600-97467200	Weak transcription	Placenta	Placenta

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