Variant report

Variant	rs34705993
Chromosome Location	chr9:97469447-97469448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97468561..97472300-chr9:97479703..97482025,3	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10081702	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10117499	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10117956	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10118261	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10119354	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10124091	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10124217	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10993307	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993320	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12115845	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12339300	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12344517	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12344604	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12346245	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12347853	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12350284	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13287373	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13295608	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13298361	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1571144	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16911536	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16911594	0.85[EUR][1000 genomes]
rs34089610	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34165368	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34198898	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34274440	0.89[EUR][1000 genomes]
rs34540802	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35060589	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35121098	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35414853	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35823631	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35840707	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35984007	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36025648	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36039841	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55718833	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56268713	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56338410	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61247576	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6479563	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67161795	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67845333	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7032765	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72747008	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7850175	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7859242	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7871632	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7874823	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9696054	0.95[EUR][1000 genomes]
rs9696547	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97465800-97469600	Enhancers	Fetal Lung	lung
2	chr9:97465800-97469600	Enhancers	Fetal Stomach	stomach
3	chr9:97466600-97469800	Enhancers	HepG2	liver
4	chr9:97467400-97469800	Enhancers	Fetal Intestine Small	intestine
5	chr9:97469000-97470400	Weak transcription	Placenta	Placenta
6	chr9:97469200-97469600	Enhancers	Adipose Nuclei	Adipose
7	chr9:97469200-97469600	Enhancers	Liver	Liver
8	chr9:97469200-97470000	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links