Variant report

Variant	rs35060589
Chromosome Location	chr9:97447390-97447391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97444988..97448492-chr9:97460708..97463598,3	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10081702	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10117499	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10117956	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118261	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10119354	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10124091	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124217	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993307	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10993320	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12115845	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12336203	0.89[EUR][1000 genomes]
rs12337796	0.80[EUR][1000 genomes]
rs12339221	0.88[EUR][1000 genomes]
rs12339300	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12339942	0.85[EUR][1000 genomes]
rs12344517	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12344604	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12346245	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347853	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350284	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12685159	0.88[EUR][1000 genomes]
rs13287373	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13295608	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13298361	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1571144	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16911536	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16911594	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34000226	0.88[EUR][1000 genomes]
rs34089610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34165368	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34198898	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34274440	0.80[EUR][1000 genomes]
rs34540802	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34705993	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35121098	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35414853	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35557606	0.88[EUR][1000 genomes]
rs35823631	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35840707	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35984007	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36025648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36039841	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41281164	0.86[EUR][1000 genomes]
rs55718833	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56268713	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56338410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60605105	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61247576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61388738	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6479563	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67161795	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67845333	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7032765	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72747008	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7850175	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7859242	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7871632	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874823	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9696054	0.85[EUR][1000 genomes]
rs9696547	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97432200-97449800	Weak transcription	Right Atrium	heart
2	chr9:97438800-97449800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:97444200-97447800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:97444200-97448600	Weak transcription	Fetal Intestine Large	intestine
5	chr9:97444400-97447800	Weak transcription	NHDF-Ad	bronchial
6	chr9:97444400-97448000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr9:97444400-97448200	Weak transcription	Osteobl	bone
8	chr9:97444400-97448400	Weak transcription	HepG2	liver
9	chr9:97444600-97448400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:97444800-97448600	Weak transcription	A549	lung
11	chr9:97445400-97448200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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