Variant report

Variant rs12461390
Chromosome Location chr19:53305242-53305243
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:53294600-53311400 ZNF genes & repeats Liver Liver
2 chr19:53296200-53324000 Weak transcription Fetal Brain Male brain
3 chr19:53297400-53314000 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
4 chr19:53299200-53311400 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
5 chr19:53299200-53314000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr19:53299200-53314000 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
7 chr19:53299200-53314000 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
8 chr19:53299200-53314000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
9 chr19:53299600-53314000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr19:53299600-53314000 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
11 chr19:53299800-53314000 ZNF genes & repeats Primary hematopoietic stem cells blood
12 chr19:53300000-53308200 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
13 chr19:53300200-53305600 ZNF genes & repeats Fetal Brain Female brain
14 chr19:53300200-53306600 ZNF genes & repeats Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr19:53300400-53308200 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
16 chr19:53301000-53305800 ZNF genes & repeats Brain Angular Gyrus brain
17 chr19:53301000-53308000 ZNF genes & repeats Foreskin Fibroblast Primary Cells skin01 Skin
18 chr19:53301000-53308400 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
19 chr19:53301000-53314000 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr19:53301400-53305600 ZNF genes & repeats Muscle Satellite Cultured Cells --
21 chr19:53301400-53306000 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
22 chr19:53301400-53306000 ZNF genes & repeats Skeletal Muscle Female skeletal muscle
23 chr19:53301400-53308000 ZNF genes & repeats Fetal Lung lung
24 chr19:53301400-53308800 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
25 chr19:53301400-53309200 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
26 chr19:53301400-53309600 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr19:53301400-53309600 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
28 chr19:53301400-53310200 ZNF genes & repeats Adipose Nuclei Adipose
29 chr19:53301400-53312000 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr19:53301400-53314000 ZNF genes & repeats Duodenum Mucosa Duodenum
31 chr19:53301600-53305600 ZNF genes & repeats Dnd41 blood
32 chr19:53301600-53307800 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr19:53301600-53308200 ZNF genes & repeats H1 Cell Line embryonic stem cell
34 chr19:53301800-53308200 ZNF genes & repeats Brain Hippocampus Middle brain
35 chr19:53301800-53308600 ZNF genes & repeats Primary T cells from cord blood blood
36 chr19:53302000-53305400 ZNF genes & repeats K562 blood
37 chr19:53302000-53305600 Strong transcription Placenta Placenta
38 chr19:53302000-53305800 ZNF genes & repeats Brain Dorsolateral Prefrontal Cortex brain
39 chr19:53302000-53314000 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
40 chr19:53302200-53305600 ZNF genes & repeats HSMM muscle
41 chr19:53302200-53305800 ZNF genes & repeats HSMMtube muscle
42 chr19:53302200-53308200 ZNF genes & repeats iPS-18 Cell Line embryonic stem cell
43 chr19:53302200-53308200 ZNF genes & repeats Primary T helper memory cells from peripheral blood 2 blood
44 chr19:53302200-53310000 ZNF genes & repeats Rectal Mucosa Donor 29 rectum
45 chr19:53302200-53311400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr19:53302200-53311400 ZNF genes & repeats Primary T killer naive cells fromperipheralblood blood
47 chr19:53302400-53308200 ZNF genes & repeats HUES48 Cell Line embryonic stem cell
48 chr19:53302400-53308600 ZNF genes & repeats Primary T helper memory cells from peripheral blood 1 blood
49 chr19:53302600-53305800 ZNF genes & repeats Brain Inferior Temporal Lobe brain
50 chr19:53302800-53314000 ZNF genes & repeats Primary neutrophils fromperipheralblood blood

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