Variant report

Variant	rs12563560
Chromosome Location	chr1:220658704-220658705
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220656489..220659131-chr1:220664304..220666525,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC096644.1-1	chr1:220658446-220658782	XLOC_001211

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12562165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12562172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12562686	0.84[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12563333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12563619	0.91[EUR][1000 genomes]
rs12564062	0.91[EUR][1000 genomes]
rs12568872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568969	0.82[JPT][hapmap];0.91[EUR][1000 genomes]
rs13375694	0.95[ASN][1000 genomes]
rs1338775	0.87[EUR][1000 genomes]
rs17007981	1.00[ASW][hapmap];1.00[JPT][hapmap]
rs1933881	0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs55875950	0.91[EUR][1000 genomes]
rs56659017	0.91[EUR][1000 genomes]
rs57725868	0.91[EUR][1000 genomes]
rs58948810	0.82[ASN][1000 genomes]
rs60807411	0.82[ASN][1000 genomes]
rs60843898	0.91[EUR][1000 genomes]
rs6669351	0.86[EUR][1000 genomes]
rs6685446	0.82[JPT][hapmap];0.91[EUR][1000 genomes]
rs6688366	0.91[EUR][1000 genomes]
rs73092253	0.91[EUR][1000 genomes]
rs73092254	0.91[EUR][1000 genomes]
rs73092256	0.91[EUR][1000 genomes]
rs73092261	0.91[EUR][1000 genomes]
rs73092264	0.91[EUR][1000 genomes]
rs73092269	0.91[EUR][1000 genomes]
rs73092271	0.91[EUR][1000 genomes]
rs73092272	0.91[EUR][1000 genomes]
rs73092273	0.91[EUR][1000 genomes]
rs73092281	0.91[EUR][1000 genomes]
rs73092282	0.91[EUR][1000 genomes]
rs74139652	0.91[EUR][1000 genomes]
rs74139653	0.91[EUR][1000 genomes]
rs74139660	0.91[EUR][1000 genomes]
rs74139668	0.91[EUR][1000 genomes]
rs74139669	0.91[EUR][1000 genomes]
rs7516373	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7522502	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7530302	1.00[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap]
rs7537705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220656800-220659200	Enhancers	Placenta	Placenta
2	chr1:220657000-220658800	Enhancers	Aorta	Aorta
3	chr1:220657000-220660800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:220657200-220658800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr1:220657200-220659400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:220657400-220658800	Enhancers	Fetal Muscle Leg	muscle
7	chr1:220657400-220660200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr1:220657600-220660600	Weak transcription	Hela-S3	cervix
9	chr1:220657800-220660000	Weak transcription	Fetal Intestine Large	intestine
10	chr1:220658600-220665800	Weak transcription	Adipose Nuclei	Adipose

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