Variant report

Variant rs12594857
Chromosome Location chr15:45667178-45667179
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:45648200-45668600 Weak transcription Colonic Mucosa Colon
2 chr15:45650600-45668000 Weak transcription Right Ventricle heart
3 chr15:45652600-45668800 Weak transcription Spleen Spleen
4 chr15:45652800-45669800 Weak transcription Lung lung
5 chr15:45654200-45668800 Weak transcription Primary hematopoietic stem cells short term culture blood
6 chr15:45655200-45668000 Weak transcription Fetal Brain Male brain
7 chr15:45656400-45668400 Weak transcription Psoas Muscle Psoas
8 chr15:45658400-45667600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
9 chr15:45658400-45668000 Weak transcription Esophagus oesophagus
10 chr15:45658400-45668000 Weak transcription Gastric stomach
11 chr15:45658400-45669600 Weak transcription Aorta Aorta
12 chr15:45658600-45668600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr15:45659000-45667400 Weak transcription Adipose Nuclei Adipose
14 chr15:45659000-45668200 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr15:45660400-45667800 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr15:45660800-45668600 Weak transcription Left Ventricle heart
17 chr15:45661000-45668600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr15:45661600-45668400 Weak transcription Primary B cells from peripheral blood blood
19 chr15:45662000-45667200 Weak transcription Stomach Smooth Muscle stomach
20 chr15:45662200-45667600 Weak transcription Fetal Muscle Leg muscle
21 chr15:45662400-45667600 Weak transcription Ovary ovary
22 chr15:45662800-45668400 Weak transcription GM12878-XiMat blood
23 chr15:45664400-45667800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr15:45664400-45669600 Weak transcription Small Intestine intestine
25 chr15:45664400-45669800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
26 chr15:45664600-45668200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr15:45665000-45667600 Weak transcription Rectal Smooth Muscle rectum
28 chr15:45665000-45668000 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr15:45665000-45668200 Weak transcription Rectal Mucosa Donor 29 rectum
30 chr15:45665000-45668200 Weak transcription HSMMtube muscle
31 chr15:45665000-45668400 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr15:45665200-45667800 Weak transcription HSMM muscle
33 chr15:45665200-45668000 Weak transcription Brain Germinal Matrix brain
34 chr15:45665200-45668000 Enhancers Brain Inferior Temporal Lobe brain
35 chr15:45665200-45668000 Weak transcription Fetal Brain Female brain
36 chr15:45665400-45667800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr15:45666000-45668000 Genic enhancers Brain Substantia Nigra brain
38 chr15:45666200-45667200 Enhancers Colon Smooth Muscle Colon
39 chr15:45666200-45667800 Enhancers Brain Angular Gyrus brain
40 chr15:45666200-45668200 Weak transcription HepG2 liver
41 chr15:45666400-45668200 Weak transcription Cortex derived primary cultured neurospheres brain
42 chr15:45666400-45668400 Active TSS Pancreatic Islets Pancreatic Islet
43 chr15:45666400-45668800 Weak transcription Stomach Mucosa stomach
44 chr15:45666600-45667200 Flanking Active TSS Liver Liver
45 chr15:45666600-45667600 Weak transcription Brain Anterior Caudate brain
46 chr15:45666600-45669600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
47 chr15:45666800-45667600 Genic enhancers Brain Hippocampus Middle brain
48 chr15:45666800-45667600 Weak transcription Duodenum Smooth Muscle Duodenum
49 chr15:45666800-45667800 Active TSS Pancreas Pancrea
50 chr15:45666800-45668600 Genic enhancers Fetal Intestine Large intestine

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