Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chrX:73562956-73563657	PBDE	blood:	n/a	chrX:73562958-73562965
2	GATA2	chrX:73562902-73563182	HUVEC	blood vessel:	n/a	chrX:73562958-73562965
3	CTCF	chrX:73562945-73563078	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
ENSG00000226515	TF binding region

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10855819	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs1151599	1.00[JPT][hapmap]
rs1151602	1.00[JPT][hapmap]
rs1263240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1263243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1263259	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs12835261	1.00[JPT][hapmap]
rs1341326	1.00[JPT][hapmap]
rs174164	1.00[JPT][hapmap]
rs2066449	1.00[JPT][hapmap]
rs34974916	0.94[CEU][hapmap]
rs473645	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs486337	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs486485	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs499282	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs527480	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs557647	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs575348	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs5937811	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs5981268	1.00[JPT][hapmap]
rs5981594	1.00[JPT][hapmap]
rs5981595	1.00[JPT][hapmap]
rs5981614	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv520605	chrX:73549327-73569476	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73562400-73563600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chrX:73562600-73564200	Enhancers	Stomach Mucosa	stomach
3	chrX:73562600-73564600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chrX:73562800-73563200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chrX:73562800-73563400	Enhancers	A549	lung
6	chrX:73562800-73563600	Enhancers	Duodenum Mucosa	Duodenum
7	chrX:73562800-73564600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chrX:73562800-73564600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chrX:73562800-73564600	Enhancers	Hela-S3	cervix
10	chrX:73563000-73563200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chrX:73563000-73563600	Enhancers	NHDF-Ad	bronchial
12	chrX:73563000-73563800	Enhancers	HUVEC	blood vessel

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