Variant report
| Variant | rs1151599 |
|---|---|
| Chromosome Location | chrX:73521041-73521042 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chrX:73520723-73521077 | IMR90 | lung: | n/a | n/a |
| 2 | MAFK | chrX:73520740-73521073 | HepG2 | liver: | n/a | n/a |
| 3 | MAFK | chrX:73520799-73521042 | Hela-S3 | cervix: | n/a | n/a |
| 4 | MAFF | chrX:73520750-73521075 | HepG2 | liver: | n/a | chrX:73520886-73520904 |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chrX:73511522..73514027-chrX:73519638..73522110,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ZCCHC13 | TF binding region |
| ENSG00000230590 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10855819 | 1.00[JPT][hapmap] |
| rs1151602 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs1263240 | 1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs1263243 | 1.00[JPT][hapmap] |
| rs1263244 | 1.00[JPT][hapmap] |
| rs1263259 | 1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs12835261 | 1.00[JPT][hapmap] |
| rs1341326 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs174164 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs2066449 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs3747435 | 0.92[CEU][hapmap] |
| rs473645 | 1.00[JPT][hapmap] |
| rs486337 | 1.00[JPT][hapmap] |
| rs486485 | 1.00[JPT][hapmap] |
| rs4892491 | 1.00[CHB][hapmap] |
| rs499282 | 1.00[JPT][hapmap] |
| rs527480 | 1.00[JPT][hapmap] |
| rs557647 | 1.00[JPT][hapmap] |
| rs575348 | 1.00[JPT][hapmap] |
| rs5937811 | 1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs5981258 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs5981268 | 1.00[JPT][hapmap] |
| rs5981589 | 1.00[CHB][hapmap] |
| rs5981594 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs5981595 | 0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs5981614 | 1.00[JPT][hapmap] |
| rs604174 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs6607463 | 1.00[CHB][hapmap] |
| rs6647038 | 1.00[CHB][hapmap] |
| rs6647445 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6647446 | 1.00[CHB][hapmap] |
| rs6647448 | 1.00[CHB][hapmap] |
| rs6647454 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6655556 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3364045 | chrX:72896383-73699363 | Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 301 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:73513800-73521400 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
| 2 | chrX:73519800-73521400 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
