Variant report

Variant	rs604174
Chromosome Location	chrX:73470494-73470495
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1151599	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1151602	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1341326	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs174164	0.82[CHB][hapmap]
rs2066449	1.00[CHB][hapmap]
rs3747435	1.00[CEU][hapmap]
rs4892491	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs5981258	1.00[CHB][hapmap]
rs5981589	1.00[CHB][hapmap];0.84[MEX][hapmap]
rs5981594	1.00[CHB][hapmap];0.82[MEX][hapmap]
rs5981595	0.91[CEU][hapmap];0.82[CHB][hapmap];0.95[YRI][hapmap]
rs6607463	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[MEX][hapmap]
rs6647038	1.00[CHB][hapmap];0.84[MEX][hapmap]
rs6647039	1.00[CEU][hapmap]
rs6647445	1.00[CHB][hapmap]
rs6647446	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs6647448	1.00[CHB][hapmap]
rs6647454	1.00[CHB][hapmap]
rs6655556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	esv3439689	chrX:73355891-73478378	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	217 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73413800-73474000	Weak transcription	NHLF	lung
2	chrX:73421000-73479600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chrX:73422400-73498600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chrX:73423000-73479600	Weak transcription	Spleen	Spleen
5	chrX:73434800-73488400	Weak transcription	Esophagus	oesophagus
6	chrX:73435000-73506800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chrX:73435800-73479600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chrX:73436600-73478800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chrX:73438600-73471000	Weak transcription	Primary B cells from peripheral blood	blood
10	chrX:73438800-73498600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chrX:73439000-73479400	Weak transcription	Primary T cells from cord blood	blood
12	chrX:73445000-73476000	Weak transcription	Brain Germinal Matrix	brain
13	chrX:73447200-73500800	Weak transcription	GM12878-XiMat	blood
14	chrX:73456000-73496800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chrX:73456400-73477800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chrX:73456400-73503000	Weak transcription	Fetal Brain Male	brain
17	chrX:73456600-73471000	Weak transcription	Small Intestine	intestine
18	chrX:73456800-73472800	Weak transcription	Brain Angular Gyrus	brain
19	chrX:73456800-73494800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chrX:73457000-73494200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chrX:73457800-73474400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chrX:73458400-73479600	Weak transcription	Thymus	Thymus
23	chrX:73458800-73500200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chrX:73459000-73471000	Weak transcription	Aorta	Aorta
25	chrX:73459000-73479600	Weak transcription	Fetal Thymus	thymus
26	chrX:73460400-73470800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chrX:73460600-73479800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chrX:73460800-73489800	Weak transcription	Primary B cells from cord blood	blood
29	chrX:73462200-73475200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chrX:73462200-73479800	Weak transcription	Right Ventricle	heart
31	chrX:73462800-73471000	Weak transcription	Gastric	stomach
32	chrX:73462800-73479400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chrX:73463000-73471600	Weak transcription	Liver	Liver
34	chrX:73463000-73472800	Weak transcription	HSMM	muscle
35	chrX:73463000-73473600	Weak transcription	HSMMtube	muscle
36	chrX:73463000-73479800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chrX:73463200-73489600	Weak transcription	NH-A	brain
38	chrX:73463400-73471000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chrX:73463400-73475200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chrX:73463800-73470600	Weak transcription	Psoas Muscle	Psoas
41	chrX:73465400-73471200	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chrX:73466200-73479600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chrX:73466400-73470600	Weak transcription	Hela-S3	cervix
44	chrX:73467000-73478000	Weak transcription	H1 Cell Line	embryonic stem cell
45	chrX:73467200-73471000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chrX:73467200-73473200	Enhancers	HUVEC	blood vessel
47	chrX:73467200-73487800	Weak transcription	NHDF-Ad	bronchial
48	chrX:73467400-73475600	Weak transcription	Dnd41	blood
49	chrX:73467800-73472200	Enhancers	Placenta	Placenta
50	chrX:73468000-73471800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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