Variant report

Variant	rs3747435
Chromosome Location	chrX:73425062-73425063
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:73421402..73424298-chrX:73424887..73427787,2	MCF-7	breast:
2	chrX:73420710..73422994-chrX:73423909..73426337,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RLIM-2	chrX:73425037-73428011	NONHSAT137608

Variant related genes	Relation type
ENSG00000228492	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1151599	0.92[CEU][hapmap]
rs1151602	0.92[CEU][hapmap]
rs1341326	0.83[CEU][hapmap]
rs5981595	0.85[CEU][hapmap]
rs604174	1.00[CEU][hapmap]
rs6647039	1.00[CEU][hapmap]
rs6655556	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	esv3439689	chrX:73355891-73478378	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	217 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73413400-73428800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chrX:73413800-73474000	Weak transcription	NHLF	lung
3	chrX:73414200-73426600	Weak transcription	HSMM	muscle
4	chrX:73414600-73458600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chrX:73415400-73427000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chrX:73415400-73462400	Weak transcription	Gastric	stomach
7	chrX:73415600-73427200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chrX:73416200-73437200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chrX:73417200-73427000	Weak transcription	HUVEC	blood vessel
10	chrX:73418200-73434200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chrX:73420000-73462800	Weak transcription	NHDF-Ad	bronchial
12	chrX:73420200-73445400	Weak transcription	GM12878-XiMat	blood
13	chrX:73420400-73426200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chrX:73420600-73426400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chrX:73420800-73434400	Weak transcription	Esophagus	oesophagus
16	chrX:73421000-73429000	Weak transcription	Thymus	Thymus
17	chrX:73421000-73434400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chrX:73421000-73435600	Weak transcription	Primary T cells from cord blood	blood
19	chrX:73421000-73436000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chrX:73421000-73436200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chrX:73421000-73444000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chrX:73421000-73461800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chrX:73421000-73479600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chrX:73421200-73425200	Weak transcription	Dnd41	blood
25	chrX:73421200-73434200	Weak transcription	Primary B cells from cord blood	blood
26	chrX:73421200-73435200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chrX:73421200-73459800	Weak transcription	NH-A	brain
28	chrX:73421400-73437000	Weak transcription	Brain Angular Gyrus	brain
29	chrX:73421400-73470000	Weak transcription	Brain Anterior Caudate	brain
30	chrX:73421600-73432400	Weak transcription	Primary B cells from peripheral blood	blood
31	chrX:73421800-73427200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chrX:73421800-73428400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chrX:73422000-73426800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chrX:73422000-73434000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chrX:73422200-73436000	Weak transcription	Small Intestine	intestine
36	chrX:73422400-73498600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chrX:73422600-73429600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chrX:73422600-73457800	Weak transcription	Brain Substantia Nigra	brain
39	chrX:73422800-73468800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chrX:73422800-73470000	Weak transcription	Brain Hippocampus Middle	brain
41	chrX:73423000-73426800	Weak transcription	Fetal Stomach	stomach
42	chrX:73423000-73427000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chrX:73423000-73427200	Weak transcription	Fetal Intestine Small	intestine
44	chrX:73423000-73427400	Weak transcription	Fetal Muscle Trunk	muscle
45	chrX:73423000-73428200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chrX:73423000-73433200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chrX:73423000-73436200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chrX:73423000-73437000	Weak transcription	HepG2	liver
49	chrX:73423000-73437800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chrX:73423000-73444800	Weak transcription	Psoas Muscle	Psoas

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