Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chrX:73391291-73391731	U2OS	brain:	n/a	n/a
2	SETDB1	chrX:73390799-73391843	U2OS	brain:	n/a	n/a
3	KAP1	chrX:73391078-73391742	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
USMG5P1	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1151599	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1151602	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1263240	1.00[JPT][hapmap]
rs1263243	1.00[JPT][hapmap]
rs1263244	1.00[JPT][hapmap]
rs1341326	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs174164	1.00[JPT][hapmap]
rs2066449	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3747435	0.85[CEU][hapmap]
rs4892491	0.82[CHB][hapmap]
rs5981258	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs5981589	0.82[CHB][hapmap]
rs5981594	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs604174	0.91[CEU][hapmap];0.82[CHB][hapmap];0.95[YRI][hapmap]
rs6607463	0.82[CHB][hapmap]
rs6647038	0.82[CHB][hapmap]
rs6647445	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6647446	0.82[CHB][hapmap]
rs6647448	0.82[CHB][hapmap]
rs6647454	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6655556	0.91[CEU][hapmap];0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	esv3439689	chrX:73355891-73478378	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	217 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73379800-73394800	Weak transcription	Aorta	Aorta
2	chrX:73381000-73391600	Weak transcription	Right Atrium	heart
3	chrX:73381400-73392000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chrX:73381400-73401000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chrX:73381600-73398400	Weak transcription	Left Ventricle	heart
6	chrX:73386400-73392800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chrX:73389800-73393600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chrX:73389800-73393600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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