Variant report

Variant	rs6647454
Chromosome Location	chrX:73332546-73332547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1151599	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1151602	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1341326	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs174164	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2066449	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4892491	1.00[CHB][hapmap]
rs5981258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs5981589	1.00[CHB][hapmap]
rs5981594	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5981595	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs604174	1.00[CHB][hapmap]
rs6607463	1.00[CHB][hapmap]
rs6647038	1.00[CHB][hapmap]
rs6647445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6647446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6647448	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap]
rs6655556	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73306800-73353000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chrX:73319000-73340800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chrX:73319600-73347800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chrX:73320400-73343000	Weak transcription	Left Ventricle	heart
5	chrX:73321600-73349400	Weak transcription	Right Ventricle	heart
6	chrX:73322000-73340800	Weak transcription	Fetal Intestine Large	intestine
7	chrX:73323400-73349400	Weak transcription	Brain Angular Gyrus	brain
8	chrX:73323600-73353000	Weak transcription	Aorta	Aorta
9	chrX:73324400-73338800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chrX:73324400-73351200	Weak transcription	Duodenum Mucosa	Duodenum
11	chrX:73324800-73337600	Weak transcription	Placenta	Placenta
12	chrX:73325200-73340800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chrX:73325800-73337600	Weak transcription	Fetal Intestine Small	intestine
14	chrX:73326000-73339000	Weak transcription	HSMM	muscle
15	chrX:73326000-73341000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chrX:73326400-73340800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chrX:73327200-73338800	Weak transcription	HSMMtube	muscle
18	chrX:73327200-73340800	Weak transcription	Liver	Liver
19	chrX:73331200-73341000	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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