Variant report

Variant	rs1341326
Chromosome Location	chrX:73439467-73439468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:73422222..73423835-chrX:73438962..73441930,2	K562	blood:
2	chrX:73431631..73436850-chrX:73438454..73440647,4	K562	blood:
3	chrX:73432716..73434685-chrX:73438454..73440502,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RLIM-2	chrX:73436901-73467758	NONHSAT137611
2	lnc-ZCCHC13-6	chrX:73438472-73439552	NONHSAT137617

Variant related genes	Relation type
ENSG00000228492	Chromatin interaction
ENSG00000271533	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10855819	1.00[JPT][hapmap]
rs1151599	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1151602	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1263240	1.00[JPT][hapmap]
rs1263243	1.00[JPT][hapmap]
rs1263244	1.00[JPT][hapmap]
rs1263259	1.00[JPT][hapmap]
rs12835261	1.00[JPT][hapmap]
rs174164	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2066449	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3747435	0.83[CEU][hapmap]
rs473645	1.00[JPT][hapmap]
rs486337	1.00[JPT][hapmap]
rs486485	1.00[JPT][hapmap]
rs4892491	1.00[CHB][hapmap]
rs499282	1.00[JPT][hapmap]
rs527480	1.00[JPT][hapmap]
rs557647	1.00[JPT][hapmap]
rs575348	1.00[JPT][hapmap]
rs5981258	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5981268	1.00[JPT][hapmap]
rs5981589	1.00[CHB][hapmap]
rs5981594	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5981595	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs5981614	1.00[JPT][hapmap]
rs604174	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6607463	1.00[CHB][hapmap]
rs6647038	1.00[CHB][hapmap]
rs6647445	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6647446	1.00[CHB][hapmap]
rs6647448	1.00[CHB][hapmap]
rs6647454	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6655556	0.90[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	esv3439689	chrX:73355891-73478378	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	217 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73413800-73474000	Weak transcription	NHLF	lung
2	chrX:73414600-73458600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chrX:73415400-73462400	Weak transcription	Gastric	stomach
4	chrX:73420000-73462800	Weak transcription	NHDF-Ad	bronchial
5	chrX:73420200-73445400	Weak transcription	GM12878-XiMat	blood
6	chrX:73421000-73444000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chrX:73421000-73461800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chrX:73421000-73479600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chrX:73421200-73459800	Weak transcription	NH-A	brain
10	chrX:73421400-73470000	Weak transcription	Brain Anterior Caudate	brain
11	chrX:73422400-73498600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chrX:73422600-73457800	Weak transcription	Brain Substantia Nigra	brain
13	chrX:73422800-73468800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chrX:73422800-73470000	Weak transcription	Brain Hippocampus Middle	brain
15	chrX:73423000-73444800	Weak transcription	Psoas Muscle	Psoas
16	chrX:73423000-73479600	Weak transcription	Spleen	Spleen
17	chrX:73423400-73459400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chrX:73423400-73462600	Weak transcription	Pancreas	Pancrea
19	chrX:73424200-73456200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chrX:73424600-73444200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chrX:73425000-73446600	Weak transcription	NHEK	skin
22	chrX:73425600-73441200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chrX:73425800-73445800	Weak transcription	K562	blood
24	chrX:73426200-73439600	Weak transcription	Rectal Smooth Muscle	rectum
25	chrX:73426800-73445000	Strong transcription	A549	lung
26	chrX:73427400-73449400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chrX:73427600-73441600	Weak transcription	Right Ventricle	heart
28	chrX:73427800-73441400	Weak transcription	Lung	lung
29	chrX:73428600-73448800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chrX:73428800-73444800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chrX:73431000-73452000	Weak transcription	HMEC	breast
32	chrX:73431200-73443000	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chrX:73431200-73449000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chrX:73431800-73441200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chrX:73432400-73440000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chrX:73432800-73440000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chrX:73432800-73443800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chrX:73433000-73445000	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chrX:73433200-73468600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chrX:73433200-73470400	Weak transcription	Primary hematopoietic stem cells	blood
41	chrX:73433600-73440600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chrX:73433600-73445600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chrX:73434000-73439600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chrX:73434200-73440200	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chrX:73434400-73441000	Strong transcription	Dnd41	blood
46	chrX:73434600-73444400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chrX:73434800-73444800	Weak transcription	Fetal Stomach	stomach
48	chrX:73434800-73445000	Weak transcription	Colon Smooth Muscle	Colon
49	chrX:73434800-73488400	Weak transcription	Esophagus	oesophagus
50	chrX:73435000-73460600	Weak transcription	Primary B cells from cord blood	blood

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