Variant report

Variant	rs174164
Chromosome Location	chrX:73492823-73492824
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:73492202..73495589-chrX:73498666..73501053,3	K562	blood:
2	chrX:73491678..73493521-chrX:73507833..73510468,2	K562	blood:
3	chrX:73489124..73498793-chrX:73505032..73513429,13	K562	blood:

Variant related genes	Relation type
ENSG00000207820	Chromatin interaction
ENSG00000199168	Chromatin interaction
ENSG00000230590	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10855819	1.00[JPT][hapmap]
rs1151599	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1151602	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1263240	1.00[JPT][hapmap]
rs1263243	1.00[JPT][hapmap]
rs1263244	1.00[JPT][hapmap]
rs1263259	1.00[JPT][hapmap]
rs12835261	1.00[JPT][hapmap]
rs1341326	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2066449	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs473645	1.00[JPT][hapmap]
rs486337	1.00[JPT][hapmap]
rs486485	1.00[JPT][hapmap]
rs4892491	0.82[CHB][hapmap]
rs499282	1.00[JPT][hapmap]
rs527480	1.00[JPT][hapmap]
rs557647	1.00[JPT][hapmap]
rs575348	1.00[JPT][hapmap]
rs5937811	1.00[JPT][hapmap]
rs5981258	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs5981268	1.00[JPT][hapmap]
rs5981589	0.82[CHB][hapmap];0.92[YRI][hapmap]
rs5981594	0.94[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs5981595	1.00[JPT][hapmap]
rs5981614	1.00[JPT][hapmap]
rs604174	0.82[CHB][hapmap]
rs6607463	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap]
rs6647038	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs6647445	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6647446	0.82[CHB][hapmap]
rs6647448	0.82[CHB][hapmap]
rs6647454	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6655556	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73422400-73498600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chrX:73435000-73506800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chrX:73438800-73498600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chrX:73447200-73500800	Weak transcription	GM12878-XiMat	blood
5	chrX:73456000-73496800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chrX:73456400-73503000	Weak transcription	Fetal Brain Male	brain
7	chrX:73456800-73494800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chrX:73457000-73494200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chrX:73458800-73500200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chrX:73471000-73510400	Weak transcription	Colonic Mucosa	Colon
11	chrX:73471200-73499600	Weak transcription	Small Intestine	intestine
12	chrX:73471400-73510400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chrX:73471800-73494200	Weak transcription	K562	blood
14	chrX:73471800-73497600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chrX:73471800-73499600	Weak transcription	Brain Substantia Nigra	brain
16	chrX:73471800-73507000	Weak transcription	HMEC	breast
17	chrX:73472000-73504400	Weak transcription	NHEK	skin
18	chrX:73473400-73494200	Weak transcription	HepG2	liver
19	chrX:73474800-73497800	Weak transcription	NHLF	lung
20	chrX:73474800-73511000	Weak transcription	Gastric	stomach
21	chrX:73475000-73497200	Weak transcription	Brain Cingulate Gyrus	brain
22	chrX:73480000-73500600	Weak transcription	Spleen	Spleen
23	chrX:73480200-73503000	Weak transcription	Pancreas	Pancrea
24	chrX:73480400-73496800	Weak transcription	Brain Germinal Matrix	brain
25	chrX:73480400-73510000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chrX:73480600-73494200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chrX:73480600-73494400	Weak transcription	Left Ventricle	heart
28	chrX:73480600-73494400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chrX:73480600-73495000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chrX:73480600-73496800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chrX:73480600-73497400	Weak transcription	Right Ventricle	heart
32	chrX:73480600-73498200	Weak transcription	Rectal Smooth Muscle	rectum
33	chrX:73480600-73510400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chrX:73480800-73493000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chrX:73480800-73493200	Weak transcription	Fetal Stomach	stomach
36	chrX:73480800-73495600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chrX:73480800-73507400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chrX:73481200-73494000	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chrX:73481200-73494200	Weak transcription	Fetal Brain Female	brain
40	chrX:73481200-73500000	Weak transcription	Fetal Heart	heart
41	chrX:73481400-73494600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chrX:73481400-73495200	Weak transcription	Brain Hippocampus Middle	brain
43	chrX:73481400-73508000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chrX:73482000-73493200	Weak transcription	Fetal Intestine Small	intestine
45	chrX:73482200-73493200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chrX:73482200-73494000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chrX:73482200-73494600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chrX:73482200-73495000	Weak transcription	Thymus	Thymus
49	chrX:73482600-73494000	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chrX:73482600-73499600	Weak transcription	Primary hematopoietic stem cells	blood

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