Variant report

Variant	rs1151602
Chromosome Location	chrX:73491663-73491664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:73489124..73498793-chrX:73505032..73513429,13	K562	blood:
2	chrX:73490177..73491875-chrX:73510808..73513006,2	MCF-7	breast:
3	chrX:73490228..73491818-chrX:73497197..73498718,2	K562	blood:

Variant related genes	Relation type
ENSG00000207820	Chromatin interaction
ENSG00000199168	Chromatin interaction
ENSG00000230590	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10855819	1.00[JPT][hapmap]
rs1151599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1263240	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1263243	1.00[JPT][hapmap]
rs1263244	1.00[JPT][hapmap]
rs1263259	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12835261	1.00[JPT][hapmap]
rs1341326	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs174164	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2066449	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3747435	0.92[CEU][hapmap]
rs473645	1.00[JPT][hapmap]
rs486337	1.00[JPT][hapmap]
rs486485	1.00[JPT][hapmap]
rs4892491	1.00[CHB][hapmap]
rs499282	1.00[JPT][hapmap]
rs527480	1.00[JPT][hapmap]
rs557647	1.00[JPT][hapmap]
rs575348	1.00[JPT][hapmap]
rs5937811	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5981258	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5981268	1.00[JPT][hapmap]
rs5981589	1.00[CHB][hapmap]
rs5981594	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5981595	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs5981614	1.00[JPT][hapmap]
rs604174	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6607463	1.00[CHB][hapmap]
rs6647038	1.00[CHB][hapmap]
rs6647445	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6647446	1.00[CHB][hapmap]
rs6647448	1.00[CHB][hapmap]
rs6647454	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6655556	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73422400-73498600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chrX:73435000-73506800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chrX:73438800-73498600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chrX:73447200-73500800	Weak transcription	GM12878-XiMat	blood
5	chrX:73456000-73496800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chrX:73456400-73503000	Weak transcription	Fetal Brain Male	brain
7	chrX:73456800-73494800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chrX:73457000-73494200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chrX:73458800-73500200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chrX:73471000-73510400	Weak transcription	Colonic Mucosa	Colon
11	chrX:73471200-73499600	Weak transcription	Small Intestine	intestine
12	chrX:73471400-73510400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chrX:73471800-73491800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chrX:73471800-73494200	Weak transcription	K562	blood
15	chrX:73471800-73497600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chrX:73471800-73499600	Weak transcription	Brain Substantia Nigra	brain
17	chrX:73471800-73507000	Weak transcription	HMEC	breast
18	chrX:73472000-73504400	Weak transcription	NHEK	skin
19	chrX:73473000-73492000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chrX:73473400-73494200	Weak transcription	HepG2	liver
21	chrX:73474800-73497800	Weak transcription	NHLF	lung
22	chrX:73474800-73511000	Weak transcription	Gastric	stomach
23	chrX:73475000-73497200	Weak transcription	Brain Cingulate Gyrus	brain
24	chrX:73480000-73500600	Weak transcription	Spleen	Spleen
25	chrX:73480200-73503000	Weak transcription	Pancreas	Pancrea
26	chrX:73480400-73496800	Weak transcription	Brain Germinal Matrix	brain
27	chrX:73480400-73510000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chrX:73480600-73494200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chrX:73480600-73494400	Weak transcription	Left Ventricle	heart
30	chrX:73480600-73494400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chrX:73480600-73495000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chrX:73480600-73496800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chrX:73480600-73497400	Weak transcription	Right Ventricle	heart
34	chrX:73480600-73498200	Weak transcription	Rectal Smooth Muscle	rectum
35	chrX:73480600-73510400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chrX:73480800-73492200	Strong transcription	Dnd41	blood
37	chrX:73480800-73493000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chrX:73480800-73493200	Weak transcription	Fetal Stomach	stomach
39	chrX:73480800-73495600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chrX:73480800-73507400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chrX:73481200-73494000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chrX:73481200-73494200	Weak transcription	Fetal Brain Female	brain
43	chrX:73481200-73500000	Weak transcription	Fetal Heart	heart
44	chrX:73481400-73494600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chrX:73481400-73495200	Weak transcription	Brain Hippocampus Middle	brain
46	chrX:73481400-73508000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chrX:73482000-73493200	Weak transcription	Fetal Intestine Small	intestine
48	chrX:73482200-73493200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chrX:73482200-73494000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chrX:73482200-73494600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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