Variant report

Variant	rs6647448
Chromosome Location	chrX:73324802-73324803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chrX:73324788-73324979	HepG2	liver:	n/a	chrX:73324887-73324902
2	STAT3	chrX:73324622-73324957	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chrX:73324609-73324994	MCF10A-Er-Src	breast:	n/a	n/a
4	MAFK	chrX:73324754-73324954	IMR90	lung:	n/a	chrX:73324887-73324902
5	FOS	chrX:73324327-73324877	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chrX:73324299-73324884	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chrX:73324634-73324876	MCF10A-Er-Src	breast:	n/a	n/a
8	MAFK	chrX:73324740-73324972	HepG2	liver:	n/a	chrX:73324887-73324902
9	STAT3	chrX:73324639-73324948	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
UHRF2P1	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1151599	1.00[CHB][hapmap]
rs1151602	1.00[CHB][hapmap]
rs1341326	1.00[CHB][hapmap]
rs174164	0.82[CHB][hapmap]
rs2066449	1.00[CHB][hapmap]
rs4892491	1.00[CHB][hapmap]
rs5981258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs5981589	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs5981594	1.00[CHB][hapmap]
rs5981595	0.82[CHB][hapmap]
rs604174	1.00[CHB][hapmap]
rs6607463	1.00[CHB][hapmap]
rs6647038	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6647445	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap]
rs6647446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs6647454	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap]
rs6655556	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73306800-73353000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chrX:73319000-73340800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chrX:73319600-73347800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chrX:73320400-73343000	Weak transcription	Left Ventricle	heart
5	chrX:73321400-73325000	Weak transcription	Ovary	ovary
6	chrX:73321600-73349400	Weak transcription	Right Ventricle	heart
7	chrX:73322000-73340800	Weak transcription	Fetal Intestine Large	intestine
8	chrX:73323400-73325400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chrX:73323400-73349400	Weak transcription	Brain Angular Gyrus	brain
10	chrX:73323600-73325800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
11	chrX:73323600-73353000	Weak transcription	Aorta	Aorta
12	chrX:73323800-73330000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chrX:73324000-73325200	Enhancers	HMEC	breast
14	chrX:73324200-73327400	Weak transcription	Pancreas	Pancrea
15	chrX:73324200-73328000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chrX:73324400-73325200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chrX:73324400-73329600	Weak transcription	Esophagus	oesophagus
18	chrX:73324400-73338800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chrX:73324400-73351200	Weak transcription	Duodenum Mucosa	Duodenum
20	chrX:73324800-73325000	Enhancers	NHEK	skin
21	chrX:73324800-73325200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chrX:73324800-73325400	Weak transcription	Adipose Nuclei	Adipose
23	chrX:73324800-73326400	Weak transcription	HSMMtube	muscle
24	chrX:73324800-73337600	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links