Variant report

Variant	rs6607463
Chromosome Location	chrX:73420577-73420578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:73419504..73422436-chrX:73510769..73513232,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230590	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1151599	1.00[CHB][hapmap]
rs1151602	1.00[CHB][hapmap]
rs1341326	1.00[CHB][hapmap]
rs174164	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap]
rs2066449	1.00[CHB][hapmap]
rs4892491	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[MEX][hapmap]
rs5981258	1.00[CHB][hapmap]
rs5981589	0.80[ASW][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap]
rs5981594	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs5981595	0.82[CHB][hapmap]
rs604174	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[MEX][hapmap]
rs6647038	0.80[ASW][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs6647445	1.00[CHB][hapmap]
rs6647446	1.00[CHB][hapmap];0.84[MEX][hapmap]
rs6647448	1.00[CHB][hapmap]
rs6647454	1.00[CHB][hapmap]
rs6655556	1.00[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	esv3439689	chrX:73355891-73478378	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	217 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73412200-73422600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chrX:73413400-73428800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chrX:73413600-73423200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chrX:73413800-73474000	Weak transcription	NHLF	lung
5	chrX:73414000-73422600	Weak transcription	HepG2	liver
6	chrX:73414200-73422600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chrX:73414200-73426600	Weak transcription	HSMM	muscle
8	chrX:73414600-73458600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chrX:73415400-73422600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chrX:73415400-73422600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chrX:73415400-73427000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chrX:73415400-73462400	Weak transcription	Gastric	stomach
13	chrX:73415600-73422400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chrX:73415600-73422800	Weak transcription	Left Ventricle	heart
15	chrX:73415600-73427200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chrX:73415800-73422400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chrX:73415800-73422400	Weak transcription	Fetal Intestine Small	intestine
18	chrX:73415800-73422600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chrX:73415800-73422600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chrX:73415800-73422600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chrX:73415800-73422600	Weak transcription	Aorta	Aorta
22	chrX:73415800-73422600	Weak transcription	Fetal Stomach	stomach
23	chrX:73416200-73437200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chrX:73417200-73423000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chrX:73417200-73427000	Weak transcription	HUVEC	blood vessel
26	chrX:73417600-73422400	Weak transcription	Placenta	Placenta
27	chrX:73418200-73434200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chrX:73419000-73422400	Weak transcription	A549	lung
29	chrX:73419200-73422600	Weak transcription	Fetal Intestine Large	intestine
30	chrX:73419400-73422400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chrX:73419400-73422400	Weak transcription	Liver	Liver
32	chrX:73419400-73422600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chrX:73419600-73422600	Weak transcription	Ovary	ovary
34	chrX:73420000-73422400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chrX:73420000-73462800	Weak transcription	NHDF-Ad	bronchial
36	chrX:73420200-73422400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chrX:73420200-73422600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chrX:73420200-73445400	Weak transcription	GM12878-XiMat	blood
39	chrX:73420400-73426200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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