Variant report

Variant	rs6655556
Chromosome Location	chrX:73424191-73424192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:73420710..73422994-chrX:73423909..73426337,2	K562	blood:

Variant related genes	Relation type
ENSG00000228492	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1151599	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1151602	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1341326	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs174164	0.82[CHB][hapmap]
rs2066449	1.00[CHB][hapmap]
rs3747435	1.00[CEU][hapmap]
rs4892491	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[MEX][hapmap]
rs5981258	1.00[CHB][hapmap]
rs5981589	1.00[CHB][hapmap]
rs5981594	1.00[CHB][hapmap]
rs5981595	0.91[CEU][hapmap];0.82[CHB][hapmap]
rs604174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]
rs6607463	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6647038	1.00[CHB][hapmap]
rs6647039	1.00[CEU][hapmap]
rs6647445	1.00[CHB][hapmap]
rs6647446	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs6647448	1.00[CHB][hapmap]
rs6647454	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	esv3439689	chrX:73355891-73478378	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	217 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73413400-73428800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chrX:73413800-73474000	Weak transcription	NHLF	lung
3	chrX:73414200-73426600	Weak transcription	HSMM	muscle
4	chrX:73414600-73458600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chrX:73415400-73427000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chrX:73415400-73462400	Weak transcription	Gastric	stomach
7	chrX:73415600-73427200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chrX:73416200-73437200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chrX:73417200-73427000	Weak transcription	HUVEC	blood vessel
10	chrX:73418200-73434200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chrX:73420000-73462800	Weak transcription	NHDF-Ad	bronchial
12	chrX:73420200-73445400	Weak transcription	GM12878-XiMat	blood
13	chrX:73420400-73426200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chrX:73420600-73426400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chrX:73420800-73434400	Weak transcription	Esophagus	oesophagus
16	chrX:73421000-73429000	Weak transcription	Thymus	Thymus
17	chrX:73421000-73434400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chrX:73421000-73435600	Weak transcription	Primary T cells from cord blood	blood
19	chrX:73421000-73436000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chrX:73421000-73436200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chrX:73421000-73444000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chrX:73421000-73461800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chrX:73421000-73479600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chrX:73421200-73425200	Weak transcription	Dnd41	blood
25	chrX:73421200-73434200	Weak transcription	Primary B cells from cord blood	blood
26	chrX:73421200-73435200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chrX:73421200-73459800	Weak transcription	NH-A	brain
28	chrX:73421400-73437000	Weak transcription	Brain Angular Gyrus	brain
29	chrX:73421400-73470000	Weak transcription	Brain Anterior Caudate	brain
30	chrX:73421600-73424200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chrX:73421600-73432400	Weak transcription	Primary B cells from peripheral blood	blood
32	chrX:73421800-73427200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chrX:73421800-73428400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chrX:73422000-73424800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chrX:73422000-73426800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chrX:73422000-73434000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chrX:73422200-73436000	Weak transcription	Small Intestine	intestine
38	chrX:73422400-73424200	Strong transcription	Liver	Liver
39	chrX:73422400-73424200	Strong transcription	A549	lung
40	chrX:73422400-73424800	Weak transcription	Fetal Brain Male	brain
41	chrX:73422400-73425000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chrX:73422400-73498600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chrX:73422600-73424200	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chrX:73422600-73424200	Strong transcription	HSMMtube	muscle
45	chrX:73422600-73424400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chrX:73422600-73424600	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chrX:73422600-73424600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
48	chrX:73422600-73429600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chrX:73422600-73457800	Weak transcription	Brain Substantia Nigra	brain
50	chrX:73422800-73424200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links