Variant report

Variant	rs12736562
Chromosome Location	chr1:84295070-84295071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84293779..84296274-chr1:84300748..84302325,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1010436	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10437027	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10489500	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10489505	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12728131	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12728368	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12735437	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12742875	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12744687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12744886	0.92[EUR][1000 genomes]
rs12746729	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12748928	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12754424	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1324487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1569748	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17520771	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17521573	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17521594	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17521713	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17522440	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17578175	0.89[AMR][1000 genomes]
rs17580638	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17580799	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17581022	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2143757	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2147391	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34561331	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35260485	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35531285	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35729141	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35906154	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36120300	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71652653	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71652654	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84281400-84316600	Weak transcription	Pancreas	Pancrea
2	chr1:84285800-84305000	Weak transcription	Liver	Liver
3	chr1:84293400-84296200	Enhancers	Placenta	Placenta
4	chr1:84293800-84295200	Weak transcription	Adipose Nuclei	Adipose
5	chr1:84294400-84295200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:84294400-84295600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:84294800-84295400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:84294800-84295800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:84294800-84296000	Enhancers	Fetal Muscle Leg	muscle
10	chr1:84294800-84296200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:84294800-84299600	Weak transcription	Fetal Heart	heart
12	chr1:84295000-84295200	Enhancers	Fetal Stomach	stomach
13	chr1:84295000-84296000	Enhancers	Brain Germinal Matrix	brain

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