Variant report

Variant	rs10489500
Chromosome Location	chr1:84236434-84236435
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84233925..84236856-chr1:84240562..84242799,2	K562	blood:
2	chr1:84233925..84236856-chr1:84240562..84242993,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1010436	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10437027	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10489505	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12728131	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12728368	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12735437	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12736562	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12742875	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12744687	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12744886	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12746729	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12748928	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12754424	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1324487	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1569748	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17520771	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17521573	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17521594	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17521713	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17522440	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17578175	0.96[AMR][1000 genomes]
rs17580638	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17580799	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17581022	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1983637	0.88[ASN][1000 genomes]
rs2143756	0.84[AMR][1000 genomes]
rs2143757	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2147391	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34561331	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35260485	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35531285	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35729141	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35906154	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36120300	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3946083	0.84[AMR][1000 genomes]
rs6663404	0.84[AMR][1000 genomes]
rs71652653	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71652654	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7524397	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33557	chr1:84236172-84236848	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84236000-84237200	Enhancers	Liver	Liver
2	chr1:84236400-84237400	Weak transcription	Primary B cells from cord blood	blood

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