Variant report

Variant	rs2143756
Chromosome Location	chr1:84226253-84226254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1010436	0.80[AMR][1000 genomes]
rs10157075	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159385	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10437027	0.80[AMR][1000 genomes]
rs10489500	0.84[AMR][1000 genomes]
rs10489505	0.81[AMR][1000 genomes]
rs12724410	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12728131	0.80[AMR][1000 genomes]
rs12735437	0.81[AMR][1000 genomes]
rs12740437	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12746729	0.84[AMR][1000 genomes]
rs12751121	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12754424	0.80[AMR][1000 genomes]
rs12759883	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17521573	0.80[AMR][1000 genomes]
rs17521594	0.80[AMR][1000 genomes]
rs17577039	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17578175	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17580638	0.80[AMR][1000 genomes]
rs17580799	0.80[AMR][1000 genomes]
rs2143757	0.81[AMR][1000 genomes]
rs34561331	0.80[AMR][1000 genomes]
rs35260485	0.80[AMR][1000 genomes]
rs35906154	0.80[AMR][1000 genomes]
rs36120300	0.80[AMR][1000 genomes]
rs3946083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6663404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6683294	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6683621	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71652653	0.80[AMR][1000 genomes]
rs71652654	0.80[AMR][1000 genomes]
rs742777	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9787087	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84223800-84226600	Weak transcription	Liver	Liver
2	chr1:84224800-84230600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:84225000-84230400	Enhancers	Primary B cells from cord blood	blood
4	chr1:84225600-84227600	Enhancers	Adipose Nuclei	Adipose
5	chr1:84225600-84228000	Enhancers	Fetal Muscle Leg	muscle
6	chr1:84225800-84227200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:84225800-84227800	Enhancers	Primary B cells from peripheral blood	blood
8	chr1:84225800-84228000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:84226000-84226400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:84226000-84227600	Enhancers	Fetal Muscle Trunk	muscle
11	chr1:84226000-84227600	Enhancers	Fetal Thymus	thymus
12	chr1:84226000-84227800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:84226200-84226400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:84226200-84227000	Enhancers	GM12878-XiMat	blood
15	chr1:84226200-84227600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:84226200-84227600	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links