Variant report

Variant	rs12754424
Chromosome Location	chr1:84285573-84285574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1010436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10437027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10489500	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10489505	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12728131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12728368	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12735437	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12736562	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12742875	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12744687	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12744886	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12746729	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12748928	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1324487	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1569748	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17520771	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17521573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17521594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17521713	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17522440	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17578175	0.93[AMR][1000 genomes]
rs17580638	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17580799	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17581022	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2143756	0.80[AMR][1000 genomes]
rs2143757	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2147391	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34561331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35260485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35531285	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35729141	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35906154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36120300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3946083	0.80[AMR][1000 genomes]
rs6663404	0.80[AMR][1000 genomes]
rs71652653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71652654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84281400-84316600	Weak transcription	Pancreas	Pancrea
2	chr1:84281600-84288400	Weak transcription	NHDF-Ad	bronchial
3	chr1:84281600-84293000	Weak transcription	Fetal Heart	heart
4	chr1:84283200-84286600	Enhancers	Placenta	Placenta
5	chr1:84283600-84286000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:84283800-84285800	Enhancers	Liver	Liver
7	chr1:84284000-84285600	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chr1:84285000-84285600	ZNF genes & repeats	Fetal Intestine Large	intestine
9	chr1:84285000-84286000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:84285200-84285800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:84285200-84288400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:84285200-84288400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:84285400-84285600	Enhancers	Duodenum Mucosa	Duodenum
14	chr1:84285400-84285800	Enhancers	Monocytes-CD14+_RO01746	blood

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