Variant report

Variant	rs17580638
Chromosome Location	chr1:84276331-84276332
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1010436	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10437027	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10489500	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10489505	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11802417	0.91[ASN][1000 genomes]
rs12728131	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12728368	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12735437	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12736562	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12742875	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12744687	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12744886	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12746729	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12748928	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12754424	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1324487	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1569748	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17520771	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17521573	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17521594	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17521713	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17522440	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17578175	0.93[AMR][1000 genomes]
rs17580799	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17581022	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2143756	0.80[AMR][1000 genomes]
rs2143757	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2147391	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34561331	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35260485	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35531285	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35729141	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35906154	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36120300	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3946083	0.80[AMR][1000 genomes]
rs6663404	0.80[AMR][1000 genomes]
rs71652653	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71652654	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84273800-84281000	Weak transcription	Adipose Nuclei	Adipose
2	chr1:84274600-84279800	Weak transcription	Liver	Liver
3	chr1:84276000-84276600	Enhancers	Fetal Muscle Leg	muscle

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