Variant report

Variant	rs12744886
Chromosome Location	chr1:84253229-84253230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1010436	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10437027	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10489500	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10489505	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11802417	0.85[ASN][1000 genomes]
rs12728131	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12728368	0.98[EUR][1000 genomes]
rs12735437	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12736562	0.92[EUR][1000 genomes]
rs12742875	0.90[EUR][1000 genomes]
rs12744687	0.90[EUR][1000 genomes]
rs12746729	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12748928	0.90[EUR][1000 genomes]
rs12754424	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1324487	0.90[EUR][1000 genomes]
rs1569748	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17520771	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17521573	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17521594	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17521713	0.98[EUR][1000 genomes]
rs17522440	0.90[EUR][1000 genomes]
rs17578175	0.82[AMR][1000 genomes]
rs17580638	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17580799	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17581022	0.98[EUR][1000 genomes]
rs2143757	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2147391	0.92[EUR][1000 genomes]
rs34561331	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35260485	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35531285	0.90[EUR][1000 genomes]
rs35729141	0.92[EUR][1000 genomes]
rs35906154	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36120300	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71652653	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71652654	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84245200-84253400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:84252200-84254200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr1:84252200-84254600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr1:84252200-84254800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:84252200-84255000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:84252400-84254600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:84252600-84253600	Enhancers	Liver	Liver
8	chr1:84252600-84255000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr1:84253000-84253600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr1:84253200-84253600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:84253200-84253800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr1:84253200-84254000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr1:84253200-84254000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:84253200-84254200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:84253200-84254600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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