Variant report

Variant	rs71652653
Chromosome Location	chr1:84282586-84282587
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1010436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10437027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489500	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10489505	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12728131	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12728368	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12735437	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12736562	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12742875	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12744687	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12744886	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12746729	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12748928	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12754424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1324487	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1569748	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17520771	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17521573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17521594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17521713	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17522440	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17578175	0.93[AMR][1000 genomes]
rs17580638	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17580799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17581022	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2143756	0.80[AMR][1000 genomes]
rs2143757	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2147391	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34561331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35260485	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35531285	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35729141	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35906154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36120300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3946083	0.80[AMR][1000 genomes]
rs6663404	0.80[AMR][1000 genomes]
rs71652654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84279800-84282800	Enhancers	Liver	Liver
2	chr1:84281200-84283600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:84281400-84316600	Weak transcription	Pancreas	Pancrea
4	chr1:84281600-84284400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:84281600-84288400	Weak transcription	NHDF-Ad	bronchial
6	chr1:84281600-84293000	Weak transcription	Fetal Heart	heart
7	chr1:84281800-84284200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:84281800-84284200	Weak transcription	Adipose Nuclei	Adipose
9	chr1:84281800-84284400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:84282000-84284600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links