Variant report

Variant	rs6663404
Chromosome Location	chr1:84223038-84223039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1010436	0.80[AMR][1000 genomes]
rs10157075	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159385	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10437027	0.80[AMR][1000 genomes]
rs10489500	0.84[AMR][1000 genomes]
rs10489505	0.81[AMR][1000 genomes]
rs12724410	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12728131	0.80[AMR][1000 genomes]
rs12735437	0.81[AMR][1000 genomes]
rs12740437	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12746729	0.84[AMR][1000 genomes]
rs12751121	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12754424	0.80[AMR][1000 genomes]
rs12759883	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17521573	0.80[AMR][1000 genomes]
rs17521594	0.80[AMR][1000 genomes]
rs17577039	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17578175	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17580638	0.80[AMR][1000 genomes]
rs17580799	0.80[AMR][1000 genomes]
rs2143756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143757	0.81[AMR][1000 genomes]
rs34561331	0.80[AMR][1000 genomes]
rs35260485	0.80[AMR][1000 genomes]
rs35906154	0.80[AMR][1000 genomes]
rs36120300	0.80[AMR][1000 genomes]
rs3946083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6683294	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6683621	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71652653	0.80[AMR][1000 genomes]
rs71652654	0.80[AMR][1000 genomes]
rs742777	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9787087	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6663404	SH3GLB1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84222200-84225800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr1:84222400-84225000	Weak transcription	Primary B cells from cord blood	blood
3	chr1:84222800-84223200	Enhancers	Adipose Nuclei	Adipose
4	chr1:84223000-84223200	Flanking Active TSS	Liver	Liver

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