Variant report

Variant	rs12743761
Chromosome Location	chr1:150341127-150341128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150339029..150341486-chr1:150354364..150356096,2	MCF-7	breast:
2	chr1:150241454..150243064-chr1:150340066..150343007,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117362	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11799813	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11800656	1.00[ASN][1000 genomes]
rs11801190	1.00[ASN][1000 genomes]
rs11802612	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11803448	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11806171	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807119	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11809332	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12723364	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12724450	1.00[ASN][1000 genomes]
rs12729727	1.00[ASN][1000 genomes]
rs12730265	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12733783	0.91[EUR][1000 genomes]
rs12735903	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12736584	1.00[ASN][1000 genomes]
rs12745672	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749958	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12756583	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12759551	1.00[ASN][1000 genomes]
rs28495360	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34001546	1.00[ASN][1000 genomes]
rs34233130	1.00[ASN][1000 genomes]
rs34307322	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34347495	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34448981	1.00[ASN][1000 genomes]
rs34514406	1.00[ASN][1000 genomes]
rs34542152	1.00[ASN][1000 genomes]
rs34609268	1.00[ASN][1000 genomes]
rs34964511	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35094010	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35347210	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35437473	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35762205	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35839143	1.00[ASN][1000 genomes]
rs35935423	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4845	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56214117	1.00[ASN][1000 genomes]
rs57323357	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58427317	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58853199	1.00[ASN][1000 genomes]
rs71515775	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622688	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622689	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622694	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622695	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622696	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622697	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71622698	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622702	1.00[ASN][1000 genomes]
rs74124663	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74124686	1.00[ASN][1000 genomes]
rs7517003	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7535275	1.00[ASN][1000 genomes]
rs7546610	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150338400-150343800	Weak transcription	Spleen	Spleen
2	chr1:150338400-150405200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:150338800-150343000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:150338800-150343200	Weak transcription	Esophagus	oesophagus
5	chr1:150338800-150346800	Weak transcription	Lung	lung
6	chr1:150339000-150342600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:150339400-150341400	Weak transcription	Stomach Mucosa	stomach
8	chr1:150339400-150341600	Weak transcription	Pancreas	Pancrea
9	chr1:150339400-150342600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:150339400-150346400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:150339400-150346400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:150339400-150346600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:150339400-150348800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr1:150339400-150372800	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:150339400-150390600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:150339600-150341400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr1:150339600-150341600	Weak transcription	Fetal Intestine Large	intestine
18	chr1:150339600-150342400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:150339600-150342600	Weak transcription	Fetal Thymus	thymus
20	chr1:150339600-150343000	Weak transcription	Psoas Muscle	Psoas
21	chr1:150339600-150343000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr1:150339600-150343200	Weak transcription	Left Ventricle	heart
23	chr1:150339600-150343400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr1:150339600-150344800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr1:150339600-150344800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr1:150339600-150345200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:150339600-150345200	Weak transcription	Ovary	ovary
28	chr1:150339600-150345800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr1:150339600-150346000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr1:150339600-150346400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr1:150339600-150346400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr1:150339600-150346400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr1:150339600-150346400	Weak transcription	Right Atrium	heart
34	chr1:150339600-150346600	Weak transcription	Small Intestine	intestine
35	chr1:150339600-150349400	Weak transcription	Fetal Stomach	stomach
36	chr1:150339600-150356400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr1:150339600-150359800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr1:150339600-150372800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr1:150339800-150341200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr1:150339800-150341400	Weak transcription	Fetal Kidney	kidney
41	chr1:150339800-150342000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr1:150339800-150342000	Enhancers	Liver	Liver
43	chr1:150339800-150342800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr1:150339800-150342800	Weak transcription	Fetal Heart	heart
45	chr1:150339800-150343000	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr1:150339800-150343200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr1:150339800-150343600	Weak transcription	Brain Anterior Caudate	brain
48	chr1:150339800-150346200	Weak transcription	Brain Hippocampus Middle	brain
49	chr1:150339800-150346200	Weak transcription	Colon Smooth Muscle	Colon
50	chr1:150339800-150346400	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links